1 Response_reg#1
9-120 aa · 112 aa · 32.0% of protein
Raw token
Response_reg:9:2.45e-31:120:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS09260
Response regulator RpfG family
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeRpfGLength350 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000156535#ROSINTL182_RS09260Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length350 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage214 / 350 aa (61.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa350 aa
Domain-by-domain annotation2 items
2 HD#2
201-302 aa · 102 aa · 29.1% of protein
Raw token
HD:201:8.02e-16:302:102:110- Raw architecture: Response_reg:9:2.45e-31:120:113:111#HD:201:8.02e-16:302:102:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000156535::NZ_GG692723.1::G00046
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span5397-11825Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07086RefSeq proteinWP_006857201.1
Context group ID
GCF_000156535::NZ_GG692723.1::G00046Context members
ROSINTL182_RS09260ROSINTL182_RS09265ROSINTL182_RS09270
Partner locus tags
ROSINTL182_RS09260ROSINTL182_RS09265ROSINTL182_RS09270
Partner old locus tags
ROSINTL182_07086ROSINTL182_07087ROSINTL182_07088
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006857201.1Primary protein accession used for annex mappings.
UniProt accessionC7GB02Primary UniProt accession resolved in the annex database.
UniProt IDC7GB02_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS09260Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07086Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692723.1Sequence record reported by the local genomic context database.
Genomic interval5 397-6 449 nt1 053 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 397-11 825 ntGCF_000156535::NZ_GG692723.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692723.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692723.1All displayed genes belong to this local TCS context.
Neighborhood span5 397-11 825 nt6 429 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 397 nt11 825 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ROSINTL182_RS09260GCF_000156535#ROSINTL182_RS09260
RRRpfGCurrent focus
5 397-6 449 nt · Forward (+)
ROSINTL182_RS09265GCF_000156535#ROSINTL182_RS09265
HKUnorthodox
6 461-9 157 nt · Forward (+)
ROSINTL182_RS09270GCF_000156535#ROSINTL182_RS09270
HKHybrid
9 150-11 825 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS09260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0479523
Simplified PFAM architecture for RROC_0479523
PFAM domain coverage: 253 / 350 aa (72.3%)
1 aa350 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[9-119] | HD_5[193-334]
- Domain count: 2
- Matched identifier: RROC_0479523
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; HD_5 193-334 ; HD_5 193-334
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS09260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key