1 sCache_like#1
69-126 aa · 58 aa · 13.3% of protein
Raw token
sCache_like:69:0.0000000162:126:58:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS08940
Histidine kinase, Classic
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeClassicLength437 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS08940Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length437 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 437 aa (53.3%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa437 aa
Domain-by-domain annotation3 items
2 HisKA#2
219-284 aa · 66 aa · 15.1% of protein
Raw token
HisKA:219:1.37e-17:284:66:643 HATPase_c#3
329-437 aa · 109 aa · 24.9% of protein
Raw token
HATPase_c:329:7.59e-28:437:109:109- Raw architecture: sCache_like:69:0.0000000162:126:58:114#HisKA:219:1.37e-17:284:66:64#HATPase_c:329:7.59e-28:437:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692722.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71230-73211Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07021RefSeq proteinWP_006857123.1
Context group ID
GCF_000156535::NZ_GG692722.1::G00049Context members
ROSINTL182_RS08940ROSINTL182_RS08945
Partner locus tags
ROSINTL182_RS08940ROSINTL182_RS08945
Partner old locus tags
ROSINTL182_07021ROSINTL182_07022
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006857123.1Primary protein accession used for annex mappings.
UniProt accessionC7GAU1Primary UniProt accession resolved in the annex database.
UniProt IDC7GAU1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS08940Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07021Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692722.1Sequence record reported by the local genomic context database.
Genomic interval71 230-72 543 nt1 314 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 230-73 211 ntGCF_000156535::NZ_GG692722.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692722.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692722.1All displayed genes belong to this local TCS context.
Neighborhood span71 230-73 211 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 230 nt73 211 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS08940GCF_000156535#ROSINTL182_RS08940
HKClassicCurrent focus
71 230-72 543 nt · Reverse (-)
ROSINTL182_RS08945GCF_000156535#ROSINTL182_RS08945
RROmpR
72 540-73 211 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS08940The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2102422
Simplified PFAM architecture for HKOC_2102422
PFAM domain coverage: 231 / 437 aa (52.9%)
1 aa437 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[67-126] | HisKA[219-283] | HATPase_c[330-435]
- Domain count: 3
- Matched identifier: HKOC_2102422
- Positioned domains: sCache_like 67-126 ; HisKA 219-283 ; HATPase_c 330-435
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS08940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key