1 Response_reg#1
4-117 aa · 114 aa · 41.5% of protein
Raw token
Response_reg:4:8.51e-31:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS07725
Response regulator, unclassified
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeunclassifiedLength275 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS07725Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length275 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 275 aa (69.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa275 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
168-209 aa · 42 aa · 15.3% of protein
Raw token
HTH_AraC:168:0.00000265:209:42:423 HTH_AraC#3
224-258 aa · 35 aa · 12.7% of protein
Raw token
HTH_AraC:224:0.00000000537:258:35:42- Raw architecture: Response_reg:4:8.51e-31:117:114:111#HTH_AraC:168:0.00000265:209:42:42#HTH_AraC:224:0.00000000537:258:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692720.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72645-74961Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_06733RefSeq proteinWP_172606742.1
Context group ID
GCF_000156535::NZ_GG692720.1::G00052Context members
ROSINTL182_RS07720ROSINTL182_RS07725
Partner locus tags
ROSINTL182_RS07720ROSINTL182_RS07725
Partner old locus tags
ROSINTL182_06732ROSINTL182_06733
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_172606742.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS07725Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_06733Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692720.1Sequence record reported by the local genomic context database.
Genomic interval74 134-74 961 nt828 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 645-74 961 ntGCF_000156535::NZ_GG692720.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692720.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692720.1All displayed genes belong to this local TCS context.
Neighborhood span72 645-74 961 nt2 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 645 nt74 961 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS07720GCF_000156535#ROSINTL182_RS07720
HKClassic
72 645-74 162 nt · Forward (+)
ROSINTL182_RS07725GCF_000156535#ROSINTL182_RS07725
RRunclassifiedCurrent focus
74 134-74 961 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS07725The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0604632
Simplified PFAM architecture for RROC_0604632
PFAM domain coverage: 190 / 275 aa (69.1%)
1 aa275 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[182-258]
- Domain count: 2
- Matched identifier: RROC_0604632
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 182-258 ; HTH_18 182-258
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS07725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key