1 HAMP#1
183-252 aa · 70 aa · 14.1% of protein
Raw token
HAMP:183:0.00000000000000503:252:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS05205
Histidine kinase, Classic
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS05205Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 495 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
263-330 aa · 68 aa · 13.7% of protein
Raw token
HisKA:263:0.0000000000000725:330:68:643 HATPase_c#3
377-490 aa · 114 aa · 23.0% of protein
Raw token
HATPase_c:377:2.99e-32:490:114:109- Raw architecture: HAMP:183:0.00000000000000503:252:70:69#HisKA:263:0.0000000000000725:330:68:64#HATPase_c:377:2.99e-32:490:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692717.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90756-92925Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_06164RefSeq proteinWP_006856296.1
Context group ID
GCF_000156535::NZ_GG692717.1::G00057Context members
ROSINTL182_RS05205ROSINTL182_RS05210
Partner locus tags
ROSINTL182_RS05205ROSINTL182_RS05210
Partner old locus tags
ROSINTL182_06164ROSINTL182_06165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006856296.1Primary protein accession used for annex mappings.
UniProt accessionC7G8E0Primary UniProt accession resolved in the annex database.
UniProt IDC7G8E0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS05205Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_06164Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692717.1Sequence record reported by the local genomic context database.
Genomic interval90 756-92 243 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span90 756-92 925 ntGCF_000156535::NZ_GG692717.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692717.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692717.1All displayed genes belong to this local TCS context.
Neighborhood span90 756-92 925 nt2 170 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 756 nt92 925 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS05205GCF_000156535#ROSINTL182_RS05205
HKClassicCurrent focus
90 756-92 243 nt · Forward (+)
ROSINTL182_RS05210GCF_000156535#ROSINTL182_RS05210
RROmpR
92 236-92 925 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS05205The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504298
Simplified PFAM architecture for HKOC_1504298
PFAM domain coverage: 227 / 495 aa (45.9%)
1 aa495 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-251] | HisKA[265-329] | HATPase_c[378-487]
- Domain count: 3
- Matched identifier: HKOC_1504298
- Positioned domains: HAMP 200-251 ; HisKA 265-329 ; HATPase_c 378-487
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS05205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key