1 HAMP#1
89-159 aa · 71 aa · 18.6% of protein
Raw token
HAMP:89:0.0000000000278:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS03845
Histidine kinase, Classic
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeClassicLength382 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156535#ROSINTL182_RS03845Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length382 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 382 aa (65.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa382 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.5% of protein
Raw token
HisKA:164:0.0000000000551:230:67:643 HATPase_c#3
272-382 aa · 111 aa · 29.1% of protein
Raw token
HATPase_c:272:2.9e-34:382:111:109- Raw architecture: HAMP:89:0.0000000000278:159:71:69#HisKA:164:0.0000000000551:230:67:64#HATPase_c:272:2.9e-34:382:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156535::NZ_GG692716.1::G00059
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span35345-36493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_05869RefSeq proteinWP_006855999.1
Context group ID
GCF_000156535::NZ_GG692716.1::G00059Context members
ROSINTL182_RS03845
Partner locus tags
ROSINTL182_RS03845
Partner old locus tags
ROSINTL182_05869
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006855999.1Primary protein accession used for annex mappings.
UniProt accessionC7G7J5Primary UniProt accession resolved in the annex database.
UniProt IDC7G7J5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS03845Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_05869Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692716.1Sequence record reported by the local genomic context database.
Genomic interval35 345-36 493 nt1 149 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 345-36 493 ntGCF_000156535::NZ_GG692716.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692716.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692716.1All displayed genes belong to this local TCS context.
Neighborhood span35 345-36 493 nt1 149 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 345 nt36 493 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ROSINTL182_RS03845GCF_000156535#ROSINTL182_RS03845
HKClassicCurrent focus
35 345-36 493 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS03845The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2590965
Simplified PFAM architecture for HKOC_2590965
PFAM domain coverage: 227 / 382 aa (59.4%)
1 aa382 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-158] | HisKA[164-229] | HATPase_c[275-382]
- Domain count: 3
- Matched identifier: HKOC_2590965
- Positioned domains: HAMP 106-158 ; HisKA 164-229 ; HATPase_c 275-382
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS03845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key