1 Response_reg#1
6-115 aa · 110 aa · 56.4% of protein
Raw token
Response_reg:6:2.94e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS02815
Response regulator OmpR family
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeOmpRLength195 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS02815Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length195 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 195 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa195 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-195 aa · 46 aa · 23.6% of protein
Raw token
Trans_reg_C:150:4.77e-17:195:46:77- Raw architecture: Response_reg:6:2.94e-34:115:111:111#Trans_reg_C:150:4.77e-17:195:46:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692715.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46224-48570Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_05630RefSeq proteinWP_006855765.1
Context group ID
GCF_000156535::NZ_GG692715.1::G00061Context members
ROSINTL182_RS02810ROSINTL182_RS02815
Partner locus tags
ROSINTL182_RS02810ROSINTL182_RS02815
Partner old locus tags
ROSINTL182_05628ROSINTL182_05630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006855765.1Primary protein accession used for annex mappings.
UniProt accessionC7G6W3Primary UniProt accession resolved in the annex database.
UniProt IDC7G6W3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS02815Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_05630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692715.1Sequence record reported by the local genomic context database.
Genomic interval47 986-48 570 nt585 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 224-48 570 ntGCF_000156535::NZ_GG692715.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692715.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692715.1All displayed genes belong to this local TCS context.
Neighborhood span46 224-48 570 nt2 347 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 224 nt48 570 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS02810GCF_000156535#ROSINTL182_RS02810
HKClassic
46 224-47 771 nt · Reverse (-)
ROSINTL182_RS02815GCF_000156535#ROSINTL182_RS02815
RROmpRCurrent focus
47 986-48 570 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406435#ARA28_RS01855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1124259
Simplified PFAM architecture for RROC_1124259
PFAM domain coverage: 184 / 232 aa (79.3%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1124259
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_001406435#ARA28_RS01855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key