1 HAMP#1
184-255 aa · 72 aa · 14.0% of protein
Raw token
HAMP:184:0.00000000000298:255:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS02810
Histidine kinase, Classic
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeClassicLength515 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS02810Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length515 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 515 aa (48.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa515 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.2% of protein
Raw token
HisKA:280:0.00000000000000271:347:68:643 HATPase_c#3
392-499 aa · 108 aa · 21.0% of protein
Raw token
HATPase_c:392:2.62e-19:499:109:109- Raw architecture: HAMP:184:0.00000000000298:255:72:69#HisKA:280:0.00000000000000271:347:68:64#HATPase_c:392:2.62e-19:499:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692715.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46224-48570Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_05628RefSeq proteinWP_006855763.1
Context group ID
GCF_000156535::NZ_GG692715.1::G00061Context members
ROSINTL182_RS02810ROSINTL182_RS02815
Partner locus tags
ROSINTL182_RS02810ROSINTL182_RS02815
Partner old locus tags
ROSINTL182_05628ROSINTL182_05630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006855763.1Primary protein accession used for annex mappings.
UniProt accessionC7G6W1Primary UniProt accession resolved in the annex database.
UniProt IDC7G6W1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS02810Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_05628Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692715.1Sequence record reported by the local genomic context database.
Genomic interval46 224-47 771 nt1 548 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 224-48 570 ntGCF_000156535::NZ_GG692715.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692715.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692715.1All displayed genes belong to this local TCS context.
Neighborhood span46 224-48 570 nt2 347 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 224 nt48 570 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS02810GCF_000156535#ROSINTL182_RS02810
HKClassicCurrent focus
46 224-47 771 nt · Reverse (-)
ROSINTL182_RS02815GCF_000156535#ROSINTL182_RS02815
RROmpR
47 986-48 570 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS02810The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1407500
Simplified PFAM architecture for HKOC_1407500
PFAM domain coverage: 174 / 515 aa (33.8%)
1 aa515 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[280-345] | HATPase_c[393-500]
- Domain count: 2
- Matched identifier: HKOC_1407500
- Positioned domains: HisKA 280-345 ; HATPase_c 393-500
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS02810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key