1 Response_reg#1
4-114 aa · 111 aa · 90.2% of protein
Raw token
Response_reg:4:2.06e-24:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS01950
Response regulator, CheY family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeCheYLength123 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS01950Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length123 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 123 aa (90.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:2.06e-24:114:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663519.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span377717-378088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_00402RefSeq proteinWP_052529786.1
Context group ID
GCF_000156015::NZ_GG663519.1::G00033Context members
BUTYVIB_RS01950
Partner locus tags
BUTYVIB_RS01950
Partner old locus tags
BUTYVIB_00402
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_052529786.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS01950Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_00402Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663519.1Sequence record reported by the local genomic context database.
Genomic interval377 717-378 088 nt372 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span377 717-378 088 ntGCF_000156015::NZ_GG663519.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663519.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663519.1All displayed genes belong to this local TCS context.
Neighborhood span377 717-378 088 nt372 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
377 717 nt378 088 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS01950GCF_000156015#BUTYVIB_RS01950
RRCheYCurrent focus
377 717-378 088 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS01950The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2391859
Simplified PFAM architecture for RROC_2391859
PFAM domain coverage: 110 / 123 aa (89.4%)
1 aa123 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-113]
- Domain count: 1
- Matched identifier: RROC_2391859
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS01950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key