1 HisKA#1
89-149 aa · 61 aa · 20.4% of protein
Raw token
HisKA:89:0.000000000000558:149:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMLAC_RS08075
Histidine kinase, Classic
[Ruminococcus] lactaris ATCC 29176 · GCF_000155205
ClassHKTypeClassicLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000155205#RUMLAC_RS08075Stable P2CS identifier used across views.
GenomeGCF_000155205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 299 aa (50.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-284 aa · 89 aa · 29.8% of protein
Raw token
HATPase_c:196:8.41e-18:284:90:109- Raw architecture: HisKA:89:0.000000000000558:149:61:64#HATPase_c:196:8.41e-18:284:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000155205::NZ_DS990192.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span96095-96994Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMLAC_01442RefSeq proteinWP_035403270.1
Context group ID
GCF_000155205::NZ_DS990192.1::G00009Context members
RUMLAC_RS08075
Partner locus tags
RUMLAC_RS08075
Partner old locus tags
RUMLAC_01442
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_035403270.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5EY44Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5EY44_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMLAC_RS08075Primary locus identifier stored in the genes table.
Old locus tagRUMLAC_01442Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990192.1Sequence record reported by the local genomic context database.
Genomic interval96 095-96 994 nt900 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 095-96 994 ntGCF_000155205::NZ_DS990192.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155205::NZ_DS990192.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990192.1All displayed genes belong to this local TCS context.
Neighborhood span96 095-96 994 nt900 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 095 nt96 994 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RUMLAC_RS08075GCF_000155205#RUMLAC_RS08075
HKClassicCurrent focus
96 095-96 994 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155205#RUMLAC_RS08075The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2887601
Simplified PFAM architecture for HKOC_2887601
PFAM domain coverage: 154 / 299 aa (51.5%)
1 aa299 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[196-286]
- Domain count: 2
- Matched identifier: HKOC_2887601
- Positioned domains: HisKA 86-148 ; HATPase_c 196-286
Cluster members and taxonomy
Representative gene: GCF_000155205#RUMLAC_RS08075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 875 · GCF_000155205
AssemblyASM15520v1 · Scaffoldhaploid
Genome composition2 731 235 bp · 42,5% GC[Ruminococcus] lactaris ATCC 29176
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key