1 HisKA#1
91-159 aa · 69 aa · 22.1% of protein
Raw token
HisKA:91:0.0000000217:159:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMLAC_RS04390
Histidine kinase, Classic
[Ruminococcus] lactaris ATCC 29176 · GCF_000155205
ClassHKTypeClassicLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000155205#RUMLAC_RS04390Stable P2CS identifier used across views.
GenomeGCF_000155205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 312 aa (56.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
205-312 aa · 108 aa · 34.6% of protein
Raw token
HATPase_c:205:2.39e-23:312:109:109- Raw architecture: HisKA:91:0.0000000217:159:69:64#HATPase_c:205:2.39e-23:312:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000155205::NZ_DS990179.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59107-60725Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMLAC_00346RefSeq proteinWP_005609899.1
Context group ID
GCF_000155205::NZ_DS990179.1::G00015Context members
RUMLAC_RS04385RUMLAC_RS04390
Partner locus tags
RUMLAC_RS04385RUMLAC_RS04390
Partner old locus tags
RUMLAC_00345RUMLAC_00346
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005609899.1Primary protein accession used for annex mappings.
UniProt accessionB5CLM4Primary UniProt accession resolved in the annex database.
UniProt IDB5CLM4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMLAC_RS04390Primary locus identifier stored in the genes table.
Old locus tagRUMLAC_00346Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990179.1Sequence record reported by the local genomic context database.
Genomic interval59 787-60 725 nt939 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 107-60 725 ntGCF_000155205::NZ_DS990179.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155205::NZ_DS990179.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990179.1All displayed genes belong to this local TCS context.
Neighborhood span59 107-60 725 nt1 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 107 nt60 725 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMLAC_RS04385GCF_000155205#RUMLAC_RS04385
RROmpR
59 107-59 787 nt · Forward (+)
RUMLAC_RS04390GCF_000155205#RUMLAC_RS04390
HKClassicCurrent focus
59 787-60 725 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155205#RUMLAC_RS04390The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875771
Simplified PFAM architecture for HKOC_2875771
PFAM domain coverage: 175 / 312 aa (56.1%)
1 aa312 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[92-159] | HATPase_c[205-311]
- Domain count: 2
- Matched identifier: HKOC_2875771
- Positioned domains: HisKA 92-159 ; HATPase_c 205-311
Cluster members and taxonomy
Representative gene: GCF_000155205#RUMLAC_RS04390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 875 · GCF_000155205
AssemblyASM15520v1 · Scaffoldhaploid
Genome composition2 731 235 bp · 42,5% GC[Ruminococcus] lactaris ATCC 29176
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key