1 HisKA#1
74-135 aa · 62 aa · 21.3% of protein
Raw token
HisKA:74:0.0000000000238:135:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMLAC_RS04020
Histidine kinase, Classic
[Ruminococcus] lactaris ATCC 29176 · GCF_000155205
ClassHKTypeClassicLength291 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000155205#RUMLAC_RS04020Stable P2CS identifier used across views.
GenomeGCF_000155205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length291 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 291 aa (58.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa291 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
181-288 aa · 108 aa · 37.1% of protein
Raw token
HATPase_c:181:6.17e-25:288:109:109- Raw architecture: HisKA:74:0.0000000000238:135:62:64#HATPase_c:181:6.17e-25:288:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000155205::NZ_DS990177.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14220-15805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMLAC_00258RefSeq proteinWP_226969729.1
Context group ID
GCF_000155205::NZ_DS990177.1::G00016Context members
RUMLAC_RS04015RUMLAC_RS04020
Partner locus tags
RUMLAC_RS04015RUMLAC_RS04020
Partner old locus tags
RUMLAC_00257RUMLAC_00258
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226969729.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMLAC_RS04020Primary locus identifier stored in the genes table.
Old locus tagRUMLAC_00258Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990177.1Sequence record reported by the local genomic context database.
Genomic interval14 930-15 805 nt876 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 220-15 805 ntGCF_000155205::NZ_DS990177.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155205::NZ_DS990177.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990177.1All displayed genes belong to this local TCS context.
Neighborhood span14 220-15 805 nt1 586 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 220 nt15 805 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMLAC_RS04015GCF_000155205#RUMLAC_RS04015
RROmpR
14 220-14 888 nt · Forward (+)
RUMLAC_RS04020GCF_000155205#RUMLAC_RS04020
HKClassicCurrent focus
14 930-15 805 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018379595#KH209_RS07560Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879582
Simplified PFAM architecture for HKOC_2879582
PFAM domain coverage: 170 / 309 aa (55.0%)
1 aa309 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[92-153] | HATPase_c[199-306]
- Domain count: 2
- Matched identifier: HKOC_2879582
- Positioned domains: HisKA 92-153 ; HATPase_c 199-306
Cluster members and taxonomy
Representative gene: GCF_018379595#KH209_RS07560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 875 · GCF_000155205
AssemblyASM15520v1 · Scaffoldhaploid
Genome composition2 731 235 bp · 42,5% GC[Ruminococcus] lactaris ATCC 29176
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key