1 sCache_like#1
36-129 aa · 94 aa · 20.9% of protein
Raw token
sCache_like:36:0.00000179:129:96:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMLAC_RS01360
Histidine kinase, Classic
[Ruminococcus] lactaris ATCC 29176 · GCF_000155205
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000155205#RUMLAC_RS01360Stable P2CS identifier used across views.
GenomeGCF_000155205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage274 / 450 aa (60.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
220-286 aa · 67 aa · 14.9% of protein
Raw token
HisKA:220:1.47e-16:286:67:643 HATPase_c#3
330-442 aa · 113 aa · 25.1% of protein
Raw token
HATPase_c:330:2.28e-29:442:113:109- Raw architecture: sCache_like:36:0.00000179:129:96:114#HisKA:220:1.47e-16:286:67:64#HATPase_c:330:2.28e-29:442:113:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000155205::NZ_DS990169.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17003-19026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMLAC_02605RefSeq proteinWP_005608912.1
Context group ID
GCF_000155205::NZ_DS990169.1::G00022Context members
RUMLAC_RS01360RUMLAC_RS01365
Partner locus tags
RUMLAC_RS01360RUMLAC_RS01365
Partner old locus tags
RUMLAC_02605RUMLAC_02606
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005608912.1Primary protein accession used for annex mappings.
UniProt accessionB5CSY4Primary UniProt accession resolved in the annex database.
UniProt IDB5CSY4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMLAC_RS01360Primary locus identifier stored in the genes table.
Old locus tagRUMLAC_02605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990169.1Sequence record reported by the local genomic context database.
Genomic interval17 003-18 355 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 003-19 026 ntGCF_000155205::NZ_DS990169.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155205::NZ_DS990169.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990169.1All displayed genes belong to this local TCS context.
Neighborhood span17 003-19 026 nt2 024 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 003 nt19 026 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMLAC_RS01360GCF_000155205#RUMLAC_RS01360
HKClassicCurrent focus
17 003-18 355 nt · Reverse (-)
RUMLAC_RS01365GCF_000155205#RUMLAC_RS01365
RROmpR
18 355-19 026 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155205#RUMLAC_RS01360The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1962142
Simplified PFAM architecture for HKOC_1962142
PFAM domain coverage: 176 / 450 aa (39.1%)
1 aa450 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[220-286] | HATPase_c[333-441]
- Domain count: 2
- Matched identifier: HKOC_1962142
- Positioned domains: HisKA 220-286 ; HATPase_c 333-441
Cluster members and taxonomy
Representative gene: GCF_000155205#RUMLAC_RS01360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 875 · GCF_000155205
AssemblyASM15520v1 · Scaffoldhaploid
Genome composition2 731 235 bp · 42,5% GC[Ruminococcus] lactaris ATCC 29176
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key