1 HisKA#1
466-532 aa · 67 aa · 7.9% of protein
Raw token
HisKA:466:7.07e-18:532:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS15905
Histidine kinase, Hybrid
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassHKTypeHybridLength849 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154385#FAEPRAM212_RS15905Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length849 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 849 aa (35.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa849 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
578-695 aa · 118 aa · 13.9% of protein
Raw token
HATPase_c:578:8.34e-32:695:118:1093 Response_reg#3
724-840 aa · 117 aa · 13.8% of protein
Raw token
Response_reg:724:1.09e-26:840:117:111- Raw architecture: HisKA:466:7.07e-18:532:67:64#HATPase_c:578:8.34e-32:695:118:109#Response_reg:724:1.09e-26:840:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154385::NZ_DS483483.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span6474-9023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_00016RefSeq proteinWP_242651845.1
Context group ID
GCF_000154385::NZ_DS483483.1::G00029Context members
FAEPRAM212_RS15905
Partner locus tags
FAEPRAM212_RS15905
Partner old locus tags
FAEPRAM212_00016
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242651845.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS15905Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_00016Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483483.1Sequence record reported by the local genomic context database.
Genomic interval6 474-9 023 nt2 550 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 474-9 023 ntGCF_000154385::NZ_DS483483.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483483.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483483.1All displayed genes belong to this local TCS context.
Neighborhood span6 474-9 023 nt2 550 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 474 nt9 023 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FAEPRAM212_RS15905GCF_000154385#FAEPRAM212_RS15905
HKHybridCurrent focus
6 474-9 023 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS15905The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0490494
Simplified PFAM architecture for HKOC_0490494
PFAM domain coverage: 299 / 849 aa (35.2%)
1 aa849 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[466-532] | HATPase_c[578-693] | Response_reg[724-839]
- Domain count: 3
- Matched identifier: HKOC_0490494
- Positioned domains: HisKA 466-532 ; HATPase_c 578-693 ; Response_reg 724-839
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS15905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key