1 GAF_3#1
221-344 aa · 124 aa · 20.9% of protein
Raw token
GAF_3:221:0.000000112:344:130:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS12635
Histidine kinase, Classic
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154385#FAEPRAM212_RS12635Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 592 aa (50.8%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation3 items
2 HisKA#2
364-431 aa · 68 aa · 11.5% of protein
Raw token
HisKA:364:0.0000000000128:431:68:643 HATPase_c#3
476-584 aa · 109 aa · 18.4% of protein
Raw token
HATPase_c:476:2.59e-27:584:109:109- Raw architecture: GAF_3:221:0.000000112:344:130:129#HisKA:364:0.0000000000128:431:68:64#HATPase_c:476:2.59e-27:584:109:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154385::NZ_DS483503.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span545529-548010Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_03072RefSeq proteinWP_223474483.1
Context group ID
GCF_000154385::NZ_DS483503.1::G00003Context members
FAEPRAM212_RS12630FAEPRAM212_RS12635
Partner locus tags
FAEPRAM212_RS12630FAEPRAM212_RS12635
Partner old locus tags
FAEPRAM212_03071FAEPRAM212_03072
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223474483.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS12635Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_03072Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483503.1Sequence record reported by the local genomic context database.
Genomic interval546 232-548 010 nt1 779 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span545 529-548 010 ntGCF_000154385::NZ_DS483503.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483503.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483503.1All displayed genes belong to this local TCS context.
Neighborhood span545 529-548 010 nt2 482 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
545 529 nt548 010 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAM212_RS12630GCF_000154385#FAEPRAM212_RS12630
RROmpR
545 529-546 239 nt · Reverse (-)
FAEPRAM212_RS12635GCF_000154385#FAEPRAM212_RS12635
HKClassicCurrent focus
546 232-548 010 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434015#DWZ04_RS04875Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0879196
Simplified PFAM architecture for HKOC_0879196
PFAM domain coverage: 285 / 657 aa (43.4%)
1 aa657 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[160-266] | HisKA[429-496] | HATPase_c[541-650]
- Domain count: 3
- Matched identifier: HKOC_0879196
- Positioned domains: DUF4118 160-266 ; HisKA 429-496 ; HATPase_c 541-650
Cluster members and taxonomy
Representative gene: GCF_003434015#DWZ04_RS04875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key