1 Response_reg#1
5-117 aa · 113 aa · 41.7% of protein
Raw token
Response_reg:5:1.11e-24:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS07425
Response regulator, unclassified
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassRRTypeunclassifiedLength271 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154385#FAEPRAM212_RS07425Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 271 aa (66.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa271 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
169-203 aa · 35 aa · 12.9% of protein
Raw token
HTH_AraC:169:0.00000314:203:35:423 HTH_AraC#3
229-260 aa · 32 aa · 11.8% of protein
Raw token
HTH_AraC:229:0.0000000000454:260:32:42- Raw architecture: Response_reg:5:1.11e-24:117:117:111#HTH_AraC:169:0.00000314:203:35:42#HTH_AraC:229:0.0000000000454:260:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154385::NZ_DS483500.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84450-86791Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_01454RefSeq proteinWP_005923408.1
Context group ID
GCF_000154385::NZ_DS483500.1::G00012Context members
FAEPRAM212_RS07420FAEPRAM212_RS07425
Partner locus tags
FAEPRAM212_RS07420FAEPRAM212_RS07425
Partner old locus tags
FAEPRAM212_01453FAEPRAM212_01454
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005923408.1Primary protein accession used for annex mappings.
UniProt accessionA8SAS3Primary UniProt accession resolved in the annex database.
UniProt IDA8SAS3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS07425Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_01454Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483500.1Sequence record reported by the local genomic context database.
Genomic interval85 976-86 791 nt816 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 450-86 791 ntGCF_000154385::NZ_DS483500.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483500.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483500.1All displayed genes belong to this local TCS context.
Neighborhood span84 450-86 791 nt2 342 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 450 nt86 791 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAM212_RS07420GCF_000154385#FAEPRAM212_RS07420
HKClassic
84 450-85 979 nt · Forward (+)
FAEPRAM212_RS07425GCF_000154385#FAEPRAM212_RS07425
RRunclassifiedCurrent focus
85 976-86 791 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS07425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0611960
Simplified PFAM architecture for RROC_0611960
PFAM domain coverage: 190 / 271 aa (70.1%)
1 aa271 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[183-260]
- Domain count: 2
- Matched identifier: RROC_0611960
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 183-260 ; HTH_18 183-260
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS07425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key