1 HisKA#1
163-229 aa · 67 aa · 10.0% of protein
Raw token
HisKA:163:1.39e-18:229:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS06805
Histidine kinase, Hybrid
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassHKTypeHybridLength673 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154385#FAEPRAM212_RS06805Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length673 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage415 / 673 aa (61.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa673 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
276-390 aa · 115 aa · 17.1% of protein
Raw token
HATPase_c:276:1.65e-31:390:115:1093 Response_reg#3
413-528 aa · 116 aa · 17.2% of protein
Raw token
Response_reg:413:0.00000000000000358:528:116:1114 Response_reg#4
553-669 aa · 117 aa · 17.4% of protein
Raw token
Response_reg:553:2.74e-33:669:117:111- Raw architecture: HisKA:163:1.39e-18:229:67:64#HATPase_c:276:1.65e-31:390:115:109#Response_reg:413:0.00000000000000358:528:116:111#Response_reg:553:2.74e-33:669:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154385::NZ_DS483499.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span114521-116542Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_01308RefSeq proteinWP_242651865.1
Context group ID
GCF_000154385::NZ_DS483499.1::G00015Context members
FAEPRAM212_RS06805
Partner locus tags
FAEPRAM212_RS06805
Partner old locus tags
FAEPRAM212_01308
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242651865.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS06805Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_01308Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483499.1Sequence record reported by the local genomic context database.
Genomic interval114 521-116 542 nt2 022 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 521-116 542 ntGCF_000154385::NZ_DS483499.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483499.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483499.1All displayed genes belong to this local TCS context.
Neighborhood span114 521-116 542 nt2 022 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 521 nt116 542 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FAEPRAM212_RS06805GCF_000154385#FAEPRAM212_RS06805
HKHybridCurrent focus
114 521-116 542 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS06805The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0836144
Simplified PFAM architecture for HKOC_0836144
PFAM domain coverage: 412 / 673 aa (61.2%)
1 aa673 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[163-229] | HATPase_c[277-390] | Response_reg[413-527] | Response_reg[553-668]
- Domain count: 4
- Matched identifier: HKOC_0836144
- Positioned domains: HisKA 163-229 ; HATPase_c 277-390 ; Response_reg 413-527 ; Response_reg 553-668
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS06805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key