1 Response_reg#1
10-119 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:10:1.37e-24:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS04540
Response regulator OmpR family
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154385#FAEPRAM212_RS04540Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:157:8.27e-30:233:77:77- Raw architecture: Response_reg:10:1.37e-24:119:111:111#Trans_reg_C:157:8.27e-30:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154385::NZ_DS483495.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12786-14869Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_00681RefSeq proteinWP_005922227.1
Context group ID
GCF_000154385::NZ_DS483495.1::G00020Context members
FAEPRAM212_RS04535FAEPRAM212_RS04540
Partner locus tags
FAEPRAM212_RS04535FAEPRAM212_RS04540
Partner old locus tags
FAEPRAM212_00680FAEPRAM212_00681
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005922227.1Primary protein accession used for annex mappings.
UniProt accessionA8S893Primary UniProt accession resolved in the annex database.
UniProt IDA8S893_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS04540Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_00681Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483495.1Sequence record reported by the local genomic context database.
Genomic interval14 150-14 869 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 786-14 869 ntGCF_000154385::NZ_DS483495.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483495.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483495.1All displayed genes belong to this local TCS context.
Neighborhood span12 786-14 869 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 786 nt14 869 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAM212_RS04535GCF_000154385#FAEPRAM212_RS04535
HKClassic
12 786-14 153 nt · Reverse (-)
FAEPRAM212_RS04540GCF_000154385#FAEPRAM212_RS04540
RROmpRCurrent focus
14 150-14 869 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS04540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905602
Simplified PFAM architecture for RROC_0905602
PFAM domain coverage: 182 / 239 aa (76.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-114] | Trans_reg_C[157-233]
- Domain count: 2
- Matched identifier: RROC_0905602
- Positioned domains: Response_reg 10-114 ; Response_reg 10-114 ; Trans_reg_C 157-233 ; Trans_reg_C 157-233
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS04540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key