1 HAMP#1
159-225 aa · 67 aa · 14.7% of protein
Raw token
HAMP:159:0.00000221:225:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS04535
Histidine kinase, Classic
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154385#FAEPRAM212_RS04535Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 455 aa (51.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-302 aa · 67 aa · 14.7% of protein
Raw token
HisKA:236:0.00000000000437:302:67:643 HATPase_c#3
351-452 aa · 102 aa · 22.4% of protein
Raw token
HATPase_c:351:6.48e-18:452:106:109- Raw architecture: HAMP:159:0.00000221:225:69:69#HisKA:236:0.00000000000437:302:67:64#HATPase_c:351:6.48e-18:452:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154385::NZ_DS483495.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12786-14869Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_00680RefSeq proteinWP_005922225.1
Context group ID
GCF_000154385::NZ_DS483495.1::G00020Context members
FAEPRAM212_RS04535FAEPRAM212_RS04540
Partner locus tags
FAEPRAM212_RS04535FAEPRAM212_RS04540
Partner old locus tags
FAEPRAM212_00680FAEPRAM212_00681
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005922225.1Primary protein accession used for annex mappings.
UniProt accessionA8S892Primary UniProt accession resolved in the annex database.
UniProt IDA8S892_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS04535Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_00680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483495.1Sequence record reported by the local genomic context database.
Genomic interval12 786-14 153 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 786-14 869 ntGCF_000154385::NZ_DS483495.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483495.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483495.1All displayed genes belong to this local TCS context.
Neighborhood span12 786-14 869 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 786 nt14 869 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAM212_RS04535GCF_000154385#FAEPRAM212_RS04535
HKClassicCurrent focus
12 786-14 153 nt · Reverse (-)
FAEPRAM212_RS04540GCF_000154385#FAEPRAM212_RS04540
RROmpR
14 150-14 869 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS04535The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1899594
Simplified PFAM architecture for HKOC_1899594
PFAM domain coverage: 169 / 455 aa (37.1%)
1 aa455 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-302] | HATPase_c[351-452]
- Domain count: 2
- Matched identifier: HKOC_1899594
- Positioned domains: HisKA 236-302 ; HATPase_c 351-452
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS04535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key