1 HAMP#1
50-120 aa · 71 aa · 20.5% of protein
Raw token
HAMP:50:0.0000000000073:120:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAM212_RS02280
Histidine kinase, Classic
Faecalibacterium prausnitzii M21/2 · GCF_000154385
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154385#FAEPRAM212_RS02280Stable P2CS identifier used across views.
GenomeGCF_000154385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 347 aa (69.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation3 items
2 HisKA#2
127-189 aa · 63 aa · 18.2% of protein
Raw token
HisKA:127:2.95e-16:189:63:643 HATPase_c#3
233-340 aa · 108 aa · 31.1% of protein
Raw token
HATPase_c:233:4.5e-28:340:108:109- Raw architecture: HAMP:50:0.0000000000073:120:71:69#HisKA:127:2.95e-16:189:63:64#HATPase_c:233:4.5e-28:340:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154385::NZ_DS483484.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3805-5558Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAM212_00021RefSeq proteinWP_005921179.1
Context group ID
GCF_000154385::NZ_DS483484.1::G00028Context members
FAEPRAM212_RS02275FAEPRAM212_RS02280
Partner locus tags
FAEPRAM212_RS02275FAEPRAM212_RS02280
Partner old locus tags
FAEPRAM212_00020FAEPRAM212_00021
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005921179.1Primary protein accession used for annex mappings.
UniProt accessionA8S5Z5Primary UniProt accession resolved in the annex database.
UniProt IDA8S5Z5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAM212_RS02280Primary locus identifier stored in the genes table.
Old locus tagFAEPRAM212_00021Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483484.1Sequence record reported by the local genomic context database.
Genomic interval4 515-5 558 nt1 044 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 805-5 558 ntGCF_000154385::NZ_DS483484.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154385::NZ_DS483484.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483484.1All displayed genes belong to this local TCS context.
Neighborhood span3 805-5 558 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 805 nt5 558 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FAEPRAM212_RS02275GCF_000154385#FAEPRAM212_RS02275
RROmpR
3 805-4 515 nt · Forward (+)
FAEPRAM212_RS02280GCF_000154385#FAEPRAM212_RS02280
HKClassicCurrent focus
4 515-5 558 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS02280The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2810187
Simplified PFAM architecture for HKOC_2810187
PFAM domain coverage: 220 / 347 aa (63.4%)
1 aa347 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[70-120] | HisKA[126-188] | HATPase_c[237-342]
- Domain count: 3
- Matched identifier: HKOC_2810187
- Positioned domains: HAMP 70-120 ; HisKA 126-188 ; HATPase_c 237-342
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS02280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 485 · GCF_000154385
AssemblyASM15438v1 · Scaffoldreference genome · haploid
Genome composition3 127 383 bp · 56,0% GCFaecalibacterium prausnitzii M21/2
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key