1 Response_reg#1
4-113 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:4:7.09e-26:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOL250_RS09290
Response regulator OmpR family
Clostridium sp. L2-50 · GCF_000154245
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154245#CLOL250_RS09290Stable P2CS identifier used across views.
GenomeGCF_000154245Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 220 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-219 aa · 71 aa · 32.3% of protein
Raw token
Trans_reg_C:149:2.96e-21:219:72:77- Raw architecture: Response_reg:4:7.09e-26:113:111:111#Trans_reg_C:149:2.96e-21:219:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154245::NZ_DS480323.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span103664-104326Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOL250_01737RefSeq proteinWP_008402137.1
Context group ID
GCF_000154245::NZ_DS480323.1::G00017Context members
CLOL250_RS09290
Partner locus tags
CLOL250_RS09290
Partner old locus tags
CLOL250_01737
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008402137.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOL250_RS09290Primary locus identifier stored in the genes table.
Old locus tagCLOL250_01737Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS480323.1Sequence record reported by the local genomic context database.
Genomic interval103 664-104 326 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 664-104 326 ntGCF_000154245::NZ_DS480323.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154245::NZ_DS480323.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS480323.1All displayed genes belong to this local TCS context.
Neighborhood span103 664-104 326 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 664 nt104 326 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLOL250_RS09290GCF_000154245#CLOL250_RS09290
RROmpRCurrent focus
103 664-104 326 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154245#CLOL250_RS09290The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1722993
Simplified PFAM architecture for RROC_1722993
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1722993
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_000154245#CLOL250_RS09290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 489 · GCF_000154245
AssemblyASM15424v1 · Scaffoldhaploid
Genome composition2 954 616 bp · 41,5% GCClostridium sp. L2-50
Signal transduction countsGenes 75 · HK 38 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key