1 HAMP#1
213-284 aa · 72 aa · 13.5% of protein
Raw token
HAMP:213:1.19e-18:284:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOL250_RS00065
Histidine kinase, Classic
Clostridium sp. L2-50 · GCF_000154245
ClassHKTypeClassicLength533 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154245#CLOL250_RS00065Stable P2CS identifier used across views.
GenomeGCF_000154245Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length533 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 533 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa533 aa
Domain-by-domain annotation3 items
2 HisKA#2
295-362 aa · 68 aa · 12.8% of protein
Raw token
HisKA:295:0.00000000000000468:362:68:643 HATPase_c#3
410-521 aa · 112 aa · 21.0% of protein
Raw token
HATPase_c:410:1.04e-36:521:112:109- Raw architecture: HAMP:213:1.19e-18:284:72:69#HisKA:295:0.00000000000000468:362:68:64#HATPase_c:410:1.04e-36:521:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154245::NZ_DS480311.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13169-15437Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOL250_02964RefSeq proteinWP_008399751.1
Context group ID
GCF_000154245::NZ_DS480311.1::G00043Context members
CLOL250_RS00065CLOL250_RS00070
Partner locus tags
CLOL250_RS00065CLOL250_RS00070
Partner old locus tags
CLOL250_02964CLOL250_02965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008399751.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOL250_RS00065Primary locus identifier stored in the genes table.
Old locus tagCLOL250_02964Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS480311.1Sequence record reported by the local genomic context database.
Genomic interval13 169-14 770 nt1 602 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 169-15 437 ntGCF_000154245::NZ_DS480311.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154245::NZ_DS480311.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS480311.1All displayed genes belong to this local TCS context.
Neighborhood span13 169-15 437 nt2 269 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 169 nt15 437 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOL250_RS00065GCF_000154245#CLOL250_RS00065
HKClassicCurrent focus
13 169-14 770 nt · Forward (+)
CLOL250_RS00070GCF_000154245#CLOL250_RS00070
RROmpR
14 748-15 437 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154245#CLOL250_RS00065The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1345386
Simplified PFAM architecture for HKOC_1345386
PFAM domain coverage: 226 / 533 aa (42.4%)
1 aa533 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[234-284] | HisKA[296-360] | HATPase_c[410-519]
- Domain count: 3
- Matched identifier: HKOC_1345386
- Positioned domains: HAMP 234-284 ; HisKA 296-360 ; HATPase_c 410-519
Cluster members and taxonomy
Representative gene: GCF_000154245#CLOL250_RS00065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 489 · GCF_000154245
AssemblyASM15424v1 · Scaffoldhaploid
Genome composition2 954 616 bp · 41,5% GCClostridium sp. L2-50
Signal transduction countsGenes 75 · HK 38 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key