1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:1.04e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOL250_RS05860
Response regulator OmpR family
Clostridium sp. L2-50 · GCF_000154245
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154245#CLOL250_RS05860Stable P2CS identifier used across views.
GenomeGCF_000154245Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:150:1.64e-39:226:77:77- Raw architecture: Response_reg:4:1.04e-36:113:111:111#Trans_reg_C:150:1.64e-39:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154245::NZ_DS480318.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104588-106737Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOL250_00607RefSeq proteinWP_008401318.1
Context group ID
GCF_000154245::NZ_DS480318.1::G00026Context members
CLOL250_RS05860CLOL250_RS05865
Partner locus tags
CLOL250_RS05860CLOL250_RS05865
Partner old locus tags
CLOL250_00607CLOL250_00608
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008401318.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOL250_RS05860Primary locus identifier stored in the genes table.
Old locus tagCLOL250_00607Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS480318.1Sequence record reported by the local genomic context database.
Genomic interval104 588-105 274 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 588-106 737 ntGCF_000154245::NZ_DS480318.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154245::NZ_DS480318.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS480318.1All displayed genes belong to this local TCS context.
Neighborhood span104 588-106 737 nt2 150 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 588 nt106 737 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOL250_RS05860GCF_000154245#CLOL250_RS05860
RROmpRCurrent focus
104 588-105 274 nt · Forward (+)
CLOL250_RS05865GCF_000154245#CLOL250_RS05865
HKClassic
105 283-106 737 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154245#CLOL250_RS05860The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302082
Simplified PFAM architecture for RROC_1302082
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1302082
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_000154245#CLOL250_RS05860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 489 · GCF_000154245
AssemblyASM15424v1 · Scaffoldhaploid
Genome composition2 954 616 bp · 41,5% GCClostridium sp. L2-50
Signal transduction countsGenes 75 · HK 38 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key