1 Response_reg#1
6-114 aa · 109 aa · 45.8% of protein
Raw token
Response_reg:6:2.74e-39:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOL250_RS02650
Response regulator OmpR family
Clostridium sp. L2-50 · GCF_000154245
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154245#CLOL250_RS02650Stable P2CS identifier used across views.
GenomeGCF_000154245Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 238 aa (77.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
161-235 aa · 75 aa · 31.5% of protein
Raw token
Trans_reg_C:161:5.57e-33:235:77:77- Raw architecture: Response_reg:6:2.74e-39:114:110:111#Trans_reg_C:161:5.57e-33:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154245::NZ_DS480312.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span529361-531585Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOL250_01307RefSeq proteinWP_008400486.1
Context group ID
GCF_000154245::NZ_DS480312.1::G00042Context members
CLOL250_RS02650CLOL250_RS02655
Partner locus tags
CLOL250_RS02650CLOL250_RS02655
Partner old locus tags
CLOL250_01307CLOL250_01308
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008400486.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOL250_RS02650Primary locus identifier stored in the genes table.
Old locus tagCLOL250_01307Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS480312.1Sequence record reported by the local genomic context database.
Genomic interval529 361-530 077 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span529 361-531 585 ntGCF_000154245::NZ_DS480312.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154245::NZ_DS480312.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS480312.1All displayed genes belong to this local TCS context.
Neighborhood span529 361-531 585 nt2 225 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
529 361 nt531 585 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOL250_RS02650GCF_000154245#CLOL250_RS02650
RROmpRCurrent focus
529 361-530 077 nt · Forward (+)
CLOL250_RS02655GCF_000154245#CLOL250_RS02655
HKClassic
530 080-531 585 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154245#CLOL250_RS02650The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932513
Simplified PFAM architecture for RROC_0932513
PFAM domain coverage: 184 / 238 aa (77.3%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[161-235]
- Domain count: 2
- Matched identifier: RROC_0932513
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 161-235 ; Trans_reg_C 161-235
Cluster members and taxonomy
Representative gene: GCF_000154245#CLOL250_RS02650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 489 · GCF_000154245
AssemblyASM15424v1 · Scaffoldhaploid
Genome composition2 954 616 bp · 41,5% GCClostridium sp. L2-50
Signal transduction countsGenes 75 · HK 38 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key