1 HisKA#1
204-269 aa · 66 aa · 11.3% of protein
Raw token
HisKA:204:1.13e-20:269:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOL250_RS02480
Histidine kinase, Hybrid
Clostridium sp. L2-50 · GCF_000154245
ClassHKTypeHybridLength583 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154245#CLOL250_RS02480Stable P2CS identifier used across views.
GenomeGCF_000154245Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length583 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 583 aa (51.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa583 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
316-432 aa · 117 aa · 20.1% of protein
Raw token
HATPase_c:316:8.18e-29:432:117:1093 Response_reg#3
463-578 aa · 116 aa · 19.9% of protein
Raw token
Response_reg:463:6.09e-24:578:116:111- Raw architecture: HisKA:204:1.13e-20:269:66:64#HATPase_c:316:8.18e-29:432:117:109#Response_reg:463:6.09e-24:578:116:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154245::NZ_DS480312.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span479066-480817Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOL250_01266RefSeq proteinWP_008400436.1
Context group ID
GCF_000154245::NZ_DS480312.1::G00041Context members
CLOL250_RS02480
Partner locus tags
CLOL250_RS02480
Partner old locus tags
CLOL250_01266
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008400436.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOL250_RS02480Primary locus identifier stored in the genes table.
Old locus tagCLOL250_01266Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS480312.1Sequence record reported by the local genomic context database.
Genomic interval479 066-480 817 nt1 752 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span479 066-480 817 ntGCF_000154245::NZ_DS480312.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154245::NZ_DS480312.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS480312.1All displayed genes belong to this local TCS context.
Neighborhood span479 066-480 817 nt1 752 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
479 066 nt480 817 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLOL250_RS02480GCF_000154245#CLOL250_RS02480
HKHybridCurrent focus
479 066-480 817 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154245#CLOL250_RS02480The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1147246
Simplified PFAM architecture for HKOC_1147246
PFAM domain coverage: 298 / 583 aa (51.1%)
1 aa583 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[204-269] | HATPase_c[316-432] | Response_reg[463-577]
- Domain count: 3
- Matched identifier: HKOC_1147246
- Positioned domains: HisKA 204-269 ; HATPase_c 316-432 ; Response_reg 463-577
Cluster members and taxonomy
Representative gene: GCF_000154245#CLOL250_RS02480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 489 · GCF_000154245
AssemblyASM15424v1 · Scaffoldhaploid
Genome composition2 954 616 bp · 41,5% GCClostridium sp. L2-50
Signal transduction countsGenes 75 · HK 38 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key