1 Response_reg#1
5-114 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:5:1.43e-30:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOL250_RS00790
Response regulator OmpR family
Clostridium sp. L2-50 · GCF_000154245
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154245#CLOL250_RS00790Stable P2CS identifier used across views.
GenomeGCF_000154245Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 222 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.3% of protein
Raw token
Trans_reg_C:148:3.58e-28:221:77:77- Raw architecture: Response_reg:5:1.43e-30:114:111:111#Trans_reg_C:148:3.58e-28:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154245::NZ_DS480312.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138947-141295Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOL250_02474RefSeq proteinWP_044944551.1
Context group ID
GCF_000154245::NZ_DS480312.1::G00036Context members
CLOL250_RS00785CLOL250_RS00790
Partner locus tags
CLOL250_RS00785CLOL250_RS00790
Partner old locus tags
CLOL250_02472CLOL250_02474
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044944551.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOL250_RS00790Primary locus identifier stored in the genes table.
Old locus tagCLOL250_02474Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS480312.1Sequence record reported by the local genomic context database.
Genomic interval140 627-141 295 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span138 947-141 295 ntGCF_000154245::NZ_DS480312.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154245::NZ_DS480312.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS480312.1All displayed genes belong to this local TCS context.
Neighborhood span138 947-141 295 nt2 349 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 947 nt141 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOL250_RS00785GCF_000154245#CLOL250_RS00785
HKClassic
138 947-140 446 nt · Reverse (-)
CLOL250_RS00790GCF_000154245#CLOL250_RS00790
RROmpRCurrent focus
140 627-141 295 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154245#CLOL250_RS00790The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637591
Simplified PFAM architecture for RROC_1637591
PFAM domain coverage: 184 / 222 aa (82.9%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1637591
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000154245#CLOL250_RS00790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 489 · GCF_000154245
AssemblyASM15424v1 · Scaffoldhaploid
Genome composition2 954 616 bp · 41,5% GCClostridium sp. L2-50
Signal transduction countsGenes 75 · HK 38 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key