1 HisKA#1
126-182 aa · 57 aa · 16.4% of protein
Raw token
HisKA:126:0.00000861:182:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOL250_RS00275
Histidine kinase, Classic
Clostridium sp. L2-50 · GCF_000154245
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154245#CLOL250_RS00275Stable P2CS identifier used across views.
GenomeGCF_000154245Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 347 aa (48.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
229-340 aa · 112 aa · 32.3% of protein
Raw token
HATPase_c:229:1.54e-18:340:112:109- Raw architecture: HisKA:126:0.00000861:182:60:64#HATPase_c:229:1.54e-18:340:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154245::NZ_DS480312.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17897-19623Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOL250_02351RefSeq proteinWP_008399805.1
Context group ID
GCF_000154245::NZ_DS480312.1::G00032Context members
CLOL250_RS00275CLOL250_RS00280
Partner locus tags
CLOL250_RS00275CLOL250_RS00280
Partner old locus tags
CLOL250_02351CLOL250_02352
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008399805.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOL250_RS00275Primary locus identifier stored in the genes table.
Old locus tagCLOL250_02351Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS480312.1Sequence record reported by the local genomic context database.
Genomic interval17 897-18 940 nt1 044 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 897-19 623 ntGCF_000154245::NZ_DS480312.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154245::NZ_DS480312.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS480312.1All displayed genes belong to this local TCS context.
Neighborhood span17 897-19 623 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 897 nt19 623 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOL250_RS00275GCF_000154245#CLOL250_RS00275
HKClassicCurrent focus
17 897-18 940 nt · Reverse (-)
CLOL250_RS00280GCF_000154245#CLOL250_RS00280
RROmpR
18 943-19 623 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154245#CLOL250_RS00275The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2810186
Simplified PFAM architecture for HKOC_2810186
PFAM domain coverage: 167 / 347 aa (48.1%)
1 aa347 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[128-183] | HATPase_c[230-340]
- Domain count: 2
- Matched identifier: HKOC_2810186
- Positioned domains: HisKA 128-183 ; HATPase_c 230-340
Cluster members and taxonomy
Representative gene: GCF_000154245#CLOL250_RS00275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 489 · GCF_000154245
AssemblyASM15424v1 · Scaffoldhaploid
Genome composition2 954 616 bp · 41,5% GCClostridium sp. L2-50
Signal transduction countsGenes 75 · HK 38 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key