1 HAMP#1
174-241 aa · 68 aa · 14.5% of protein
Raw token
HAMP:174:0.000000000142:241:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMOBE_RS14040
Histidine kinase, Classic
Blautia obeum ATCC 29174 · GCF_000153905
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000153905#RUMOBE_RS14040Stable P2CS identifier used across views.
GenomeGCF_000153905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 469 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa469 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-309 aa · 64 aa · 13.6% of protein
Raw token
HisKA:246:0.00000000000000328:309:64:643 HATPase_c#3
357-465 aa · 109 aa · 23.2% of protein
Raw token
HATPase_c:357:9.12e-30:465:109:109- Raw architecture: HAMP:174:0.000000000142:241:68:69#HisKA:246:0.00000000000000328:309:64:64#HATPase_c:357:9.12e-30:465:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000153905::NZ_DS264339.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58111-60218Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMOBE_01360RefSeq proteinWP_005427315.1
Context group ID
GCF_000153905::NZ_DS264339.1::G00009Context members
RUMOBE_RS14040RUMOBE_RS14045
Partner locus tags
RUMOBE_RS14040RUMOBE_RS14045
Partner old locus tags
RUMOBE_01360RUMOBE_01361
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005427315.1Primary protein accession used for annex mappings.
UniProt accessionA5ZQT3Primary UniProt accession resolved in the annex database.
UniProt IDA5ZQT3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMOBE_RS14040Primary locus identifier stored in the genes table.
Old locus tagRUMOBE_01360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264339.1Sequence record reported by the local genomic context database.
Genomic interval58 111-59 520 nt1 410 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 111-60 218 ntGCF_000153905::NZ_DS264339.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000153905::NZ_DS264339.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264339.1All displayed genes belong to this local TCS context.
Neighborhood span58 111-60 218 nt2 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 111 nt60 218 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMOBE_RS14040GCF_000153905#RUMOBE_RS14040
HKClassicCurrent focus
58 111-59 520 nt · Reverse (-)
RUMOBE_RS14045GCF_000153905#RUMOBE_RS14045
RROmpR
59 517-60 218 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153905#RUMOBE_RS14040The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1726979
Simplified PFAM architecture for HKOC_1726979
PFAM domain coverage: 220 / 469 aa (46.9%)
1 aa469 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-240] | HisKA[246-308] | HATPase_c[358-467]
- Domain count: 3
- Matched identifier: HKOC_1726979
- Positioned domains: HAMP 194-240 ; HisKA 246-308 ; HATPase_c 358-467
Cluster members and taxonomy
Representative gene: GCF_000153905#RUMOBE_RS14040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 459 · GCF_000153905
AssemblyASM15390v1 · Scaffoldhaploid
Genome composition3 625 508 bp · 41,5% GCBlautia obeum ATCC 29174
Signal transduction countsGenes 86 · HK 45 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key