1 Response_reg#1
3-113 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:3:3.67e-41:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMOBE_RS11545
Response regulator OmpR family
Blautia obeum ATCC 29174 · GCF_000153905
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000153905#RUMOBE_RS11545Stable P2CS identifier used across views.
GenomeGCF_000153905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 225 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-220 aa · 75 aa · 33.3% of protein
Raw token
Trans_reg_C:146:2.37e-25:220:76:77- Raw architecture: Response_reg:3:3.67e-41:113:111:111#Trans_reg_C:146:2.37e-25:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000153905::NZ_DS264336.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138326-140208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMOBE_02062RefSeq proteinWP_005426319.1
Context group ID
GCF_000153905::NZ_DS264336.1::G00018Context members
RUMOBE_RS11540RUMOBE_RS11545
Partner locus tags
RUMOBE_RS11540RUMOBE_RS11545
Partner old locus tags
RUMOBE_02061RUMOBE_02062
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005426319.1Primary protein accession used for annex mappings.
UniProt accessionA5ZST4Primary UniProt accession resolved in the annex database.
UniProt IDA5ZST4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMOBE_RS11545Primary locus identifier stored in the genes table.
Old locus tagRUMOBE_02062Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264336.1Sequence record reported by the local genomic context database.
Genomic interval139 531-140 208 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span138 326-140 208 ntGCF_000153905::NZ_DS264336.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000153905::NZ_DS264336.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264336.1All displayed genes belong to this local TCS context.
Neighborhood span138 326-140 208 nt1 883 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 326 nt140 208 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMOBE_RS11540GCF_000153905#RUMOBE_RS11540
HKClassic
138 326-139 534 nt · Reverse (-)
RUMOBE_RS11545GCF_000153905#RUMOBE_RS11545
RROmpRCurrent focus
139 531-140 208 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153905#RUMOBE_RS11545The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1463187
Simplified PFAM architecture for RROC_1463187
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1463187
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000153905#RUMOBE_RS11545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 459 · GCF_000153905
AssemblyASM15390v1 · Scaffoldhaploid
Genome composition3 625 508 bp · 41,5% GCBlautia obeum ATCC 29174
Signal transduction countsGenes 86 · HK 45 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key