1 Response_reg#1
3-112 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:3:3.85e-36:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ELI_RS02955
Response regulator OmpR family
Eubacterium callanderi · GCF_000152245
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000152245#ELI_RS02955Stable P2CS identifier used across views.
GenomeGCF_000152245Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 231 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 32.9% of protein
Raw token
Trans_reg_C:149:4.05e-31:224:76:77- Raw architecture: Response_reg:3:3.85e-36:112:111:111#Trans_reg_C:149:4.05e-31:224:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000152245::NC_014624.2::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span646671-649626Genomic interval covered by the local TCS group.
Identifiers
Old locus tagELI_0669RefSeq proteinWP_013379005.1
Context group ID
GCF_000152245::NC_014624.2::G00005Context members
ELI_RS02955ELI_RS20535
Partner locus tags
ELI_RS02955ELI_RS20535
Partner old locus tags
ELI_0669ELI_0670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013379005.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9CDR9Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9CDR9_EUBMLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagELI_RS02955Primary locus identifier stored in the genes table.
Old locus tagELI_0669Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014624.2Sequence record reported by the local genomic context database.
Genomic interval646 671-647 366 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span646 671-649 626 ntGCF_000152245::NC_014624.2::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000152245::NC_014624.2::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014624.2All displayed genes belong to this local TCS context.
Neighborhood span646 671-649 626 nt2 956 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
646 671 nt649 626 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ELI_RS02955GCF_000152245#ELI_RS02955
RROmpRCurrent focus
646 671-647 366 nt · Forward (+)
ELI_RS20535GCF_000152245#ELI_RS20535
HKClassic
647 332-649 626 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000152245#ELI_RS02955The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158079
Simplified PFAM architecture for RROC_1158079
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1158079
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_000152245#ELI_RS02955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 53 442 · GCF_000152245
AssemblyASM15224v2 · Complete Genomereference genome · haploid
Genome composition4 316 707 bp · 47,5% GCEubacterium callanderi
Signal transduction countsGenes 108 · HK 50 · RR 54CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key