1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:1.37e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9496_RS12540
Response regulator OmpR family
Enterococcus faecalis TX4000 · GCF_000148445
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148445#HMPREF9496_RS12540Stable P2CS identifier used across views.
GenomeGCF_000148445Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:152:1.42e-34:228:77:77- Raw architecture: Response_reg:4:1.37e-39:113:111:111#Trans_reg_C:152:1.42e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148445::NZ_GL476280.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19429-21969Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9496_01912RefSeq proteinWP_002357947.1
Context group ID
GCF_000148445::NZ_GL476280.1::G00010Context members
HMPREF9496_RS12535HMPREF9496_RS12540
Partner locus tags
HMPREF9496_RS12535HMPREF9496_RS12540
Partner old locus tags
HMPREF9496_01911HMPREF9496_01912
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002357947.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TM96Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TM96_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9496_RS12540Primary locus identifier stored in the genes table.
Old locus tagHMPREF9496_01912Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL476280.1Sequence record reported by the local genomic context database.
Genomic interval21 265-21 969 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 429-21 969 ntGCF_000148445::NZ_GL476280.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148445::NZ_GL476280.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL476280.1All displayed genes belong to this local TCS context.
Neighborhood span19 429-21 969 nt2 541 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 429 nt21 969 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9496_RS12535GCF_000148445#HMPREF9496_RS12535
HKClassic
19 429-21 258 nt · Reverse (-)
HMPREF9496_RS12540GCF_000148445#HMPREF9496_RS12540
RROmpRCurrent focus
21 265-21 969 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006541705#FKY81_RS00955Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0970105
Simplified PFAM architecture for RROC_0970105
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_0970105
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_006541705#FKY81_RS00955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 493 · GCF_000148445
AssemblyASM14844v1 · Scaffoldhaploid
Genome composition2 840 305 bp · 37,5% GCEnterococcus faecalis TX4000
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key