1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:2.43e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9496_RS04060
Response regulator NarL family
Enterococcus faecalis TX4000 · GCF_000148445
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148445#HMPREF9496_RS04060Stable P2CS identifier used across views.
GenomeGCF_000148445Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:2.06e-25:203:58:58- Raw architecture: Response_reg:4:2.43e-25:116:113:111#HTH_LUXR:146:2.06e-25:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148445::NZ_GL476248.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15326-17036Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9496_00152RefSeq proteinWP_002385277.1
Context group ID
GCF_000148445::NZ_GL476248.1::G00002Context members
HMPREF9496_RS04060HMPREF9496_RS04065
Partner locus tags
HMPREF9496_RS04060HMPREF9496_RS04065
Partner old locus tags
HMPREF9496_00152HMPREF9496_00153
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002385277.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9496_RS04060Primary locus identifier stored in the genes table.
Old locus tagHMPREF9496_00152Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL476248.1Sequence record reported by the local genomic context database.
Genomic interval15 326-15 958 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 326-17 036 ntGCF_000148445::NZ_GL476248.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148445::NZ_GL476248.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL476248.1All displayed genes belong to this local TCS context.
Neighborhood span15 326-17 036 nt1 711 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 326 nt17 036 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9496_RS04060GCF_000148445#HMPREF9496_RS04060
RRNarLCurrent focus
15 326-15 958 nt · Reverse (-)
HMPREF9496_RS04065GCF_000148445#HMPREF9496_RS04065
HKClassic
15 933-17 036 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148445#HMPREF9496_RS04060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2019030
Simplified PFAM architecture for RROC_2019030
PFAM domain coverage: 168 / 210 aa (80.0%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-203]
- Domain count: 2
- Matched identifier: RROC_2019030
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-203 ; GerE 149-203
Cluster members and taxonomy
Representative gene: GCF_000148445#HMPREF9496_RS04060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 493 · GCF_000148445
AssemblyASM14844v1 · Scaffoldhaploid
Genome composition2 840 305 bp · 37,5% GCEnterococcus faecalis TX4000
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key