1 HAMP#1
130-208 aa · 79 aa · 17.7% of protein
Raw token
HAMP:130:0.00000023:208:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9510_RS09830
Histidine kinase, Classic
Enterococcus faecalis TX0470 · GCF_000148265
ClassHKTypeClassicLength447 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148265#HMPREF9510_RS09830Stable P2CS identifier used across views.
GenomeGCF_000148265Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length447 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 447 aa (57.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa447 aa
Domain-by-domain annotation3 items
2 HisKA#2
220-284 aa · 65 aa · 14.5% of protein
Raw token
HisKA:220:0.0000000000000107:284:65:643 HATPase_c#3
329-442 aa · 114 aa · 25.5% of protein
Raw token
HATPase_c:329:5.96e-33:442:114:109- Raw architecture: HAMP:130:0.00000023:208:79:69#HisKA:220:0.0000000000000107:284:65:64#HATPase_c:329:5.96e-33:442:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148265::NZ_GL456536.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56588-58620Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9510_01341RefSeq proteinWP_002403698.1
Context group ID
GCF_000148265::NZ_GL456536.1::G00007Context members
HMPREF9510_RS09830HMPREF9510_RS09835
Partner locus tags
HMPREF9510_RS09830HMPREF9510_RS09835
Partner old locus tags
HMPREF9510_01341HMPREF9510_01342
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002403698.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9510_RS09830Primary locus identifier stored in the genes table.
Old locus tagHMPREF9510_01341Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL456536.1Sequence record reported by the local genomic context database.
Genomic interval56 588-57 931 nt1 344 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56 588-58 620 ntGCF_000148265::NZ_GL456536.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148265::NZ_GL456536.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL456536.1All displayed genes belong to this local TCS context.
Neighborhood span56 588-58 620 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 588 nt58 620 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9510_RS09830GCF_000148265#HMPREF9510_RS09830
HKClassicCurrent focus
56 588-57 931 nt · Forward (+)
HMPREF9510_RS09835GCF_000148265#HMPREF9510_RS09835
RROmpR
57 928-58 620 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148065#HMPREF9521_RS07900Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1999524
Simplified PFAM architecture for HKOC_1999524
PFAM domain coverage: 178 / 447 aa (39.8%)
1 aa447 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[220-284] | HATPase_c[330-442]
- Domain count: 2
- Matched identifier: HKOC_1999524
- Positioned domains: HisKA 220-284 ; HATPase_c 330-442
Cluster members and taxonomy
Representative gene: GCF_000148065#HMPREF9521_RS07900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 507 · GCF_000148265
AssemblyASM14826v1 · Scaffoldhaploid
Genome composition2 878 794 bp · 37,5% GCEnterococcus faecalis TX0470
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key