1 HAMP#1
180-249 aa · 70 aa · 11.5% of protein
Raw token
HAMP:180:9.51e-19:249:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9510_RS05650
Histidine kinase, Classic
Enterococcus faecalis TX0470 · GCF_000148265
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148265#HMPREF9510_RS05650Stable P2CS identifier used across views.
GenomeGCF_000148265Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage358 / 609 aa (58.8%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa609 aa
Domain-by-domain annotation4 items
2 PAS#2
259-366 aa · 108 aa · 17.7% of protein
Raw token
PAS:259:0.000000000143:366:116:1133 HisKA#3
375-442 aa · 68 aa · 11.2% of protein
Raw token
HisKA:375:3.48e-19:442:68:644 HATPase_c#4
491-602 aa · 112 aa · 18.4% of protein
Raw token
HATPase_c:491:4.12e-33:602:112:109- Raw architecture: HAMP:180:9.51e-19:249:70:69#PAS:259:0.000000000143:366:116:113#HisKA:375:3.48e-19:442:68:64#HATPase_c:491:4.12e-33:602:112:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148265::NZ_GL456521.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113613-116153Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9510_00477RefSeq proteinWP_002407107.1
Context group ID
GCF_000148265::NZ_GL456521.1::G00003Context members
HMPREF9510_RS05645HMPREF9510_RS05650
Partner locus tags
HMPREF9510_RS05645HMPREF9510_RS05650
Partner old locus tags
HMPREF9510_00476HMPREF9510_00477
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002407107.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9510_RS05650Primary locus identifier stored in the genes table.
Old locus tagHMPREF9510_00477Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL456521.1Sequence record reported by the local genomic context database.
Genomic interval114 324-116 153 nt1 830 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 613-116 153 ntGCF_000148265::NZ_GL456521.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148265::NZ_GL456521.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL456521.1All displayed genes belong to this local TCS context.
Neighborhood span113 613-116 153 nt2 541 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 613 nt116 153 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9510_RS05645GCF_000148265#HMPREF9510_RS05645
RROmpR
113 613-114 317 nt · Forward (+)
HMPREF9510_RS05650GCF_000148265#HMPREF9510_RS05650
HKClassicCurrent focus
114 324-116 153 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148265#HMPREF9510_RS05650The current gene is the representative for this cluster.
PFAM architectureCache_WalK + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1008575
Simplified PFAM architecture for HKOC_1008575
PFAM domain coverage: 424 / 609 aa (69.6%)
1 aa609 aa
Cache_WalKHAMPPASHisKAHATPase_c
- Simplified architecture: Cache_WalK + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: Cache_WalK[79-164] | HAMP[197-249] | PAS[260-366] | HisKA[376-442] | HATPase_c[491-601]
- Domain count: 5
- Matched identifier: HKOC_1008575
- Positioned domains: Cache_WalK 79-164 ; HAMP 197-249 ; PAS 260-366 ; HisKA 376-442 ; HATPase_c 491-601
Cluster members and taxonomy
Representative gene: GCF_000148265#HMPREF9510_RS05650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 507 · GCF_000148265
AssemblyASM14826v1 · Scaffoldhaploid
Genome composition2 878 794 bp · 37,5% GCEnterococcus faecalis TX0470
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key