1 HAMP#1
186-251 aa · 66 aa · 13.5% of protein
Raw token
HAMP:186:0.00000000000000557:251:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9495_RS06130
Histidine kinase, Classic
Enterococcus faecalis TX2141 · GCF_000148165
ClassHKTypeClassicLength489 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148165#HMPREF9495_RS06130Stable P2CS identifier used across views.
GenomeGCF_000148165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 489 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
262-328 aa · 67 aa · 13.7% of protein
Raw token
HisKA:262:0.00000000000000395:328:67:643 HATPase_c#3
373-482 aa · 110 aa · 22.5% of protein
Raw token
HATPase_c:373:2.07e-31:482:110:109- Raw architecture: HAMP:186:0.00000000000000557:251:66:69#HisKA:262:0.00000000000000395:328:67:64#HATPase_c:373:2.07e-31:482:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148165::NZ_GL457011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78157-80345Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9495_00524RefSeq proteinWP_002366540.1
Context group ID
GCF_000148165::NZ_GL457011.1::G00005Context members
HMPREF9495_RS06125HMPREF9495_RS06130
Partner locus tags
HMPREF9495_RS06125HMPREF9495_RS06130
Partner old locus tags
HMPREF9495_00523HMPREF9495_00524
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002366540.1Primary protein accession used for annex mappings.
UniProt accessionR3KLS7Primary UniProt accession resolved in the annex database.
UniProt IDR3KLS7_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9495_RS06130Primary locus identifier stored in the genes table.
Old locus tagHMPREF9495_00524Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL457011.1Sequence record reported by the local genomic context database.
Genomic interval78 876-80 345 nt1 470 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span78 157-80 345 ntGCF_000148165::NZ_GL457011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148165::NZ_GL457011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL457011.1All displayed genes belong to this local TCS context.
Neighborhood span78 157-80 345 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 157 nt80 345 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9495_RS06125GCF_000148165#HMPREF9495_RS06125
RROmpR
78 157-78 876 nt · Forward (+)
HMPREF9495_RS06130GCF_000148165#HMPREF9495_RS06130
HKClassicCurrent focus
78 876-80 345 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148165#HMPREF9495_RS06130The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1541232
Simplified PFAM architecture for HKOC_1541232
PFAM domain coverage: 227 / 489 aa (46.4%)
1 aa489 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-251] | HisKA[263-327] | HATPase_c[374-483]
- Domain count: 3
- Matched identifier: HKOC_1541232
- Positioned domains: HAMP 200-251 ; HisKA 263-327 ; HATPase_c 374-483
Cluster members and taxonomy
Representative gene: GCF_000148165#HMPREF9495_RS06130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 492 · GCF_000148165
AssemblyASM14816v1 · Scaffoldhaploid
Genome composition2 903 110 bp · 37,5% GCEnterococcus faecalis TX2141
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key