1 HisKA#1
146-209 aa · 64 aa · 17.3% of protein
Raw token
HisKA:146:0.0000000000302:209:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9514_RS07675
Histidine kinase, Classic
Enterococcus faecalis TX0855 · GCF_000148045
ClassHKTypeClassicLength370 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148045#HMPREF9514_RS07675Stable P2CS identifier used across views.
GenomeGCF_000148045Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length370 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 370 aa (46.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
259-367 aa · 109 aa · 29.5% of protein
Raw token
HATPase_c:259:1.1e-24:367:110:109- Raw architecture: HisKA:146:0.0000000000302:209:64:64#HATPase_c:259:1.1e-24:367:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148045::NZ_GL455650.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19468-21277Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9514_00844RefSeq proteinWP_002370559.1
Context group ID
GCF_000148045::NZ_GL455650.1::G00004Context members
HMPREF9514_RS07675HMPREF9514_RS07680
Partner locus tags
HMPREF9514_RS07675HMPREF9514_RS07680
Partner old locus tags
HMPREF9514_00844HMPREF9514_00845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002370559.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9514_RS07675Primary locus identifier stored in the genes table.
Old locus tagHMPREF9514_00844Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455650.1Sequence record reported by the local genomic context database.
Genomic interval19 468-20 580 nt1 113 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 468-21 277 ntGCF_000148045::NZ_GL455650.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148045::NZ_GL455650.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455650.1All displayed genes belong to this local TCS context.
Neighborhood span19 468-21 277 nt1 810 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 468 nt21 277 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9514_RS07675GCF_000148045#HMPREF9514_RS07675
HKClassicCurrent focus
19 468-20 580 nt · Reverse (-)
HMPREF9514_RS07680GCF_000148045#HMPREF9514_RS07680
RROmpR
20 573-21 277 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148045#HMPREF9514_RS07675The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2682654
Simplified PFAM architecture for HKOC_2682654
PFAM domain coverage: 173 / 370 aa (46.8%)
1 aa370 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[147-210] | HATPase_c[259-367]
- Domain count: 2
- Matched identifier: HKOC_2682654
- Positioned domains: HisKA 147-210 ; HATPase_c 259-367
Cluster members and taxonomy
Representative gene: GCF_000148045#HMPREF9514_RS07675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 511 · GCF_000148045
AssemblyASM14804v1 · Scaffoldhaploid
Genome composition2 987 324 bp · 37,0% GCEnterococcus faecalis TX0855
Signal transduction countsGenes 34 · HK 16 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key