1 HisKA#1
154-217 aa · 64 aa · 16.7% of protein
Raw token
HisKA:154:0.00000000000251:217:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9522_RS12915
Histidine kinase, Classic
Enterococcus faecium TX0082 · GCF_000148025
ClassHKTypeClassicLength384 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148025#HMPREF9522_RS12915Stable P2CS identifier used across views.
GenomeGCF_000148025Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length384 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 384 aa (44.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa384 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
266-373 aa · 108 aa · 28.1% of protein
Raw token
HATPase_c:266:3.09e-24:373:110:109- Raw architecture: HisKA:154:0.00000000000251:217:64:64#HATPase_c:266:3.09e-24:373:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148025::NZ_GL455946.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50-1877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9522_02072RefSeq proteinWP_002305818.1
Context group ID
GCF_000148025::NZ_GL455946.1::G00017Context members
HMPREF9522_RS12915HMPREF9522_RS12920
Partner locus tags
HMPREF9522_RS12915HMPREF9522_RS12920
Partner old locus tags
HMPREF9522_02072HMPREF9522_02073
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002305818.1Primary protein accession used for annex mappings.
UniProt accessionA0A5N0YLD9Primary UniProt accession resolved in the annex database.
UniProt IDA0A5N0YLD9_9ENTEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9522_RS12915Primary locus identifier stored in the genes table.
Old locus tagHMPREF9522_02072Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455946.1Sequence record reported by the local genomic context database.
Genomic interval50-1 204 nt1 155 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50-1 877 ntGCF_000148025::NZ_GL455946.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148025::NZ_GL455946.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455946.1All displayed genes belong to this local TCS context.
Neighborhood span50-1 877 nt1 828 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 nt1 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9522_RS12915GCF_000148025#HMPREF9522_RS12915
HKClassicCurrent focus
50-1 204 nt · Reverse (-)
HMPREF9522_RS12920GCF_000148025#HMPREF9522_RS12920
RROmpR
1 182-1 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147315#HMPREF9527_RS13805Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2572887
Simplified PFAM architecture for HKOC_2572887
PFAM domain coverage: 172 / 384 aa (44.8%)
1 aa384 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[155-217] | HATPase_c[266-374]
- Domain count: 2
- Matched identifier: HKOC_2572887
- Positioned domains: HisKA 155-217 ; HATPase_c 266-374
Cluster members and taxonomy
Representative gene: GCF_000147315#HMPREF9527_RS13805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 520 · GCF_000148025
AssemblyASM14802v1 · Scaffoldhaploid
Genome composition2 691 854 bp · 38,0% GCEnterococcus faecium TX0082
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key