1 Response_reg#1
4-119 aa · 116 aa · 22.4% of protein
Raw token
Response_reg:4:7.55e-28:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9522_RS05490
Response regulator, unclassified
Enterococcus faecium TX0082 · GCF_000148025
ClassRRTypeunclassifiedLength518 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148025#HMPREF9522_RS05490Stable P2CS identifier used across views.
GenomeGCF_000148025Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length518 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage197 / 518 aa (38.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa518 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
417-459 aa · 43 aa · 8.3% of protein
Raw token
HTH_AraC:417:0.00000203:459:43:423 HTH_AraC#3
472-509 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:472:0.00000000992:509:38:42- Raw architecture: Response_reg:4:7.55e-28:119:117:111#HTH_AraC:417:0.00000203:459:43:42#HTH_AraC:472:0.00000000992:509:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148025::NZ_GL455874.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36026-39026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9522_00458RefSeq proteinWP_002321947.1
Context group ID
GCF_000148025::NZ_GL455874.1::G00005Context members
HMPREF9522_RS05490HMPREF9522_RS05495
Partner locus tags
HMPREF9522_RS05490HMPREF9522_RS05495
Partner old locus tags
HMPREF9522_00458HMPREF9522_00459
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002321947.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9522_RS05490Primary locus identifier stored in the genes table.
Old locus tagHMPREF9522_00458Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455874.1Sequence record reported by the local genomic context database.
Genomic interval36 026-37 582 nt1 557 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 026-39 026 ntGCF_000148025::NZ_GL455874.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148025::NZ_GL455874.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455874.1All displayed genes belong to this local TCS context.
Neighborhood span36 026-39 026 nt3 001 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 026 nt39 026 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9522_RS05490GCF_000148025#HMPREF9522_RS05490
RRunclassifiedCurrent focus
36 026-37 582 nt · Reverse (-)
HMPREF9522_RS05495GCF_000148025#HMPREF9522_RS05495
HKClassic
37 575-39 026 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148025#HMPREF9522_RS05490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0129103
Simplified PFAM architecture for RROC_0129103
PFAM domain coverage: 194 / 518 aa (37.5%)
1 aa518 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-119] | HTH_18[432-509]
- Domain count: 2
- Matched identifier: RROC_0129103
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; HTH_18 432-509 ; HTH_18 432-509
Cluster members and taxonomy
Representative gene: GCF_000148025#HMPREF9522_RS05490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 520 · GCF_000148025
AssemblyASM14802v1 · Scaffoldhaploid
Genome composition2 691 854 bp · 38,0% GCEnterococcus faecium TX0082
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key