1 HisKA#1
87-144 aa · 58 aa · 19.5% of protein
Raw token
HisKA:87:0.000000000000035:144:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9522_RS12200
Histidine kinase, Classic
Enterococcus faecium TX0082 · GCF_000148025
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148025#HMPREF9522_RS12200Stable P2CS identifier used across views.
GenomeGCF_000148025Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 298 aa (55.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
191-297 aa · 107 aa · 35.9% of protein
Raw token
HATPase_c:191:1.36e-16:297:114:109- Raw architecture: HisKA:87:0.000000000000035:144:58:64#HATPase_c:191:1.36e-16:297:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148025::NZ_GL455931.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103876-105445Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9522_01918RefSeq proteinWP_002322087.1
Context group ID
GCF_000148025::NZ_GL455931.1::G00015Context members
HMPREF9522_RS12200HMPREF9522_RS12205
Partner locus tags
HMPREF9522_RS12200HMPREF9522_RS12205
Partner old locus tags
HMPREF9522_01918HMPREF9522_01919
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002322087.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9522_RS12200Primary locus identifier stored in the genes table.
Old locus tagHMPREF9522_01918Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455931.1Sequence record reported by the local genomic context database.
Genomic interval103 876-104 772 nt897 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 876-105 445 ntGCF_000148025::NZ_GL455931.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148025::NZ_GL455931.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455931.1All displayed genes belong to this local TCS context.
Neighborhood span103 876-105 445 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 876 nt105 445 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9522_RS12200GCF_000148025#HMPREF9522_RS12200
HKClassicCurrent focus
103 876-104 772 nt · Reverse (-)
HMPREF9522_RS12205GCF_000148025#HMPREF9522_RS12205
RROmpR
104 765-105 445 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148025#HMPREF9522_RS12200The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888634
Simplified PFAM architecture for HKOC_2888634
PFAM domain coverage: 157 / 298 aa (52.7%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-144] | HATPase_c[192-290]
- Domain count: 2
- Matched identifier: HKOC_2888634
- Positioned domains: HisKA 87-144 ; HATPase_c 192-290
Cluster members and taxonomy
Representative gene: GCF_000148025#HMPREF9522_RS12200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 520 · GCF_000148025
AssemblyASM14802v1 · Scaffoldhaploid
Genome composition2 691 854 bp · 38,0% GCEnterococcus faecium TX0082
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key