1 Response_reg#1
5-107 aa · 103 aa · 53.6% of protein
Raw token
Response_reg:5:2.25e-26:107:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9522_RS10015
Response regulator, unclassified
Enterococcus faecium TX0082 · GCF_000148025
ClassRRTypeunclassifiedLength192 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000148025#HMPREF9522_RS10015Stable P2CS identifier used across views.
GenomeGCF_000148025Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length192 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage103 / 192 aa (53.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa192 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:2.25e-26:107:103:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000148025::NZ_GL455909.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span57329-57907Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9522_01433RefSeq proteinWP_002289134.1
Context group ID
GCF_000148025::NZ_GL455909.1::G00012Context members
HMPREF9522_RS10015
Partner locus tags
HMPREF9522_RS10015
Partner old locus tags
HMPREF9522_01433
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002289134.1Primary protein accession used for annex mappings.
UniProt accessionQ3XY00Primary UniProt accession resolved in the annex database.
UniProt IDQ3XY00_ENTFDDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9522_RS10015Primary locus identifier stored in the genes table.
Old locus tagHMPREF9522_01433Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455909.1Sequence record reported by the local genomic context database.
Genomic interval57 329-57 907 nt579 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 329-57 907 ntGCF_000148025::NZ_GL455909.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148025::NZ_GL455909.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455909.1All displayed genes belong to this local TCS context.
Neighborhood span57 329-57 907 nt579 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 329 nt57 907 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9522_RS10015GCF_000148025#HMPREF9522_RS10015
RRunclassifiedCurrent focus
57 329-57 907 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS02195Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2165591
Simplified PFAM architecture for RROC_2165591
PFAM domain coverage: 103 / 192 aa (53.6%)
1 aa192 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-107]
- Domain count: 1
- Matched identifier: RROC_2165591
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS02195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 520 · GCF_000148025
AssemblyASM14802v1 · Scaffoldhaploid
Genome composition2 691 854 bp · 38,0% GCEnterococcus faecium TX0082
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key