1 Response_reg#1
3-113 aa · 111 aa · 45.9% of protein
Raw token
Response_reg:3:2.21e-24:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9492_RS08225
Response regulator LytTR family
Enterococcus faecalis DAPTO 512 · GCF_000148005
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148005#HMPREF9492_RS08225Stable P2CS identifier used across views.
GenomeGCF_000148005Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 242 aa (86.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
143-240 aa · 98 aa · 40.5% of protein
Raw token
LytTR:143:1.14e-39:240:98:98- Raw architecture: Response_reg:3:2.21e-24:113:113:111#LytTR:143:1.14e-39:240:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148005::NZ_GL455807.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80481-82959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9492_00942RefSeq proteinWP_002354828.1
Context group ID
GCF_000148005::NZ_GL455807.1::G00005Context members
HMPREF9492_RS08220HMPREF9492_RS08225
Partner locus tags
HMPREF9492_RS08220HMPREF9492_RS08225
Partner old locus tags
HMPREF9492_00941HMPREF9492_00942
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002354828.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TJG2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TJG2_ENTFLDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9492_RS08225Primary locus identifier stored in the genes table.
Old locus tagHMPREF9492_00942Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455807.1Sequence record reported by the local genomic context database.
Genomic interval82 231-82 959 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 481-82 959 ntGCF_000148005::NZ_GL455807.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148005::NZ_GL455807.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455807.1All displayed genes belong to this local TCS context.
Neighborhood span80 481-82 959 nt2 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 481 nt82 959 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9492_RS08220GCF_000148005#HMPREF9492_RS08220
HKClassic
80 481-82 250 nt · Forward (+)
HMPREF9492_RS08225GCF_000148005#HMPREF9492_RS08225
RRLytTRCurrent focus
82 231-82 959 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS14825Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843591
Simplified PFAM architecture for RROC_0843591
PFAM domain coverage: 207 / 242 aa (85.5%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[143-239]
- Domain count: 2
- Matched identifier: RROC_0843591
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 143-239 ; LytTR 143-239
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS14825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 489 · GCF_000148005
AssemblyASM14800v1 · Scaffoldhaploid
Genome composition3 054 417 bp · 37,5% GCEnterococcus faecalis DAPTO 512
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key