1 GAF#1
244-363 aa · 120 aa · 20.4% of protein
Raw token
GAF:244:0.00000145:363:128:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9492_RS08220
Histidine kinase, Classic
Enterococcus faecalis DAPTO 512 · GCF_000148005
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000148005#HMPREF9492_RS08220Stable P2CS identifier used across views.
GenomeGCF_000148005Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
GAFHis_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 589 aa (51.6%)Merged over positioned domains only.
Domain description1 GAF,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 His_kinase#2
378-456 aa · 79 aa · 13.4% of protein
Raw token
His_kinase:378:3.26e-30:456:80:803 HATPase_c#3
476-580 aa · 105 aa · 17.8% of protein
Raw token
HATPase_c:476:0.0000000000011:580:109:109- Raw architecture: GAF:244:0.00000145:363:128:133#His_kinase:378:3.26e-30:456:80:80#HATPase_c:476:0.0000000000011:580:109:109
- Domain description: 1 GAF,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000148005::NZ_GL455807.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80481-82959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9492_00941RefSeq proteinWP_002358984.1
Context group ID
GCF_000148005::NZ_GL455807.1::G00005Context members
HMPREF9492_RS08220HMPREF9492_RS08225
Partner locus tags
HMPREF9492_RS08220HMPREF9492_RS08225
Partner old locus tags
HMPREF9492_00941HMPREF9492_00942
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002358984.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9492_RS08220Primary locus identifier stored in the genes table.
Old locus tagHMPREF9492_00941Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455807.1Sequence record reported by the local genomic context database.
Genomic interval80 481-82 250 nt1 770 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 481-82 959 ntGCF_000148005::NZ_GL455807.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000148005::NZ_GL455807.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455807.1All displayed genes belong to this local TCS context.
Neighborhood span80 481-82 959 nt2 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 481 nt82 959 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9492_RS08220GCF_000148005#HMPREF9492_RS08220
HKClassicCurrent focus
80 481-82 250 nt · Forward (+)
HMPREF9492_RS08225GCF_000148005#HMPREF9492_RS08225
RRLytTR
82 231-82 959 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147295#HMPREF9497_RS15605Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1114760
Simplified PFAM architecture for HKOC_1114760
PFAM domain coverage: 364 / 589 aa (61.8%)
1 aa589 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[26-206] | His_kinase[378-456] | HATPase_c[476-579]
- Domain count: 3
- Matched identifier: HKOC_1114760
- Positioned domains: 5TM-5TMR_LYT 26-206 ; His_kinase 378-456 ; HATPase_c 476-579
Cluster members and taxonomy
Representative gene: GCF_000147295#HMPREF9497_RS15605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 489 · GCF_000148005
AssemblyASM14800v1 · Scaffoldhaploid
Genome composition3 054 417 bp · 37,5% GCEnterococcus faecalis DAPTO 512
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key