1 Response_reg#1
4-122 aa · 119 aa · 73.0% of protein
Raw token
Response_reg:4:0.00000000000000101:122:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9498_RS16610
Response regulator, CheY family
Enterococcus faecalis TX4248 · GCF_000147925
ClassRRTypeCheYLength163 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000147925#HMPREF9498_RS16610Stable P2CS identifier used across views.
GenomeGCF_000147925Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length163 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage119 / 163 aa (73.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa163 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.00000000000000101:122:120:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000147925::NZ_GL454482.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span98333-98824Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9498_02673RefSeq proteinWP_010829476.1
Context group ID
GCF_000147925::NZ_GL454482.1::G00016Context members
HMPREF9498_RS16610
Partner locus tags
HMPREF9498_RS16610
Partner old locus tags
HMPREF9498_02673
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_010829476.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9498_RS16610Primary locus identifier stored in the genes table.
Old locus tagHMPREF9498_02673Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454482.1Sequence record reported by the local genomic context database.
Genomic interval98 333-98 824 nt492 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span98 333-98 824 ntGCF_000147925::NZ_GL454482.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147925::NZ_GL454482.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454482.1All displayed genes belong to this local TCS context.
Neighborhood span98 333-98 824 nt492 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 333 nt98 824 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9498_RS16610GCF_000147925#HMPREF9498_RS16610
RRCheYCurrent focus
98 333-98 824 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147255#HMPREF9511_RS17380Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905556
Simplified PFAM architecture for RROC_0905556
PFAM domain coverage: 208 / 239 aa (87.0%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-122] | LytTR[151-239]
- Domain count: 2
- Matched identifier: RROC_0905556
- Positioned domains: Response_reg 4-122 ; Response_reg 4-122 ; LytTR 151-239 ; LytTR 151-239
Cluster members and taxonomy
Representative gene: GCF_000147255#HMPREF9511_RS17380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 495 · GCF_000147925
AssemblyASM14792v1 · Scaffoldhaploid
Genome composition3 187 019 bp · 37,0% GCEnterococcus faecalis TX4248
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key