1 Response_reg#1
3-113 aa · 111 aa · 45.9% of protein
Raw token
Response_reg:3:2.22e-24:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9498_RS16225
Response regulator LytTR family
Enterococcus faecalis TX4248 · GCF_000147925
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147925#HMPREF9498_RS16225Stable P2CS identifier used across views.
GenomeGCF_000147925Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 242 aa (86.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-240 aa · 98 aa · 40.5% of protein
Raw token
LytTR:143:4.5e-39:240:98:98- Raw architecture: Response_reg:3:2.22e-24:113:113:111#LytTR:143:4.5e-39:240:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147925::NZ_GL454482.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15405-17883Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9498_02589RefSeq proteinWP_002365412.1
Context group ID
GCF_000147925::NZ_GL454482.1::G00015Context members
HMPREF9498_RS16220HMPREF9498_RS16225
Partner locus tags
HMPREF9498_RS16220HMPREF9498_RS16225
Partner old locus tags
HMPREF9498_02588HMPREF9498_02589
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002365412.1Primary protein accession used for annex mappings.
UniProt accessionA0A125W338Primary UniProt accession resolved in the annex database.
UniProt IDA0A125W338_ENTFLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9498_RS16225Primary locus identifier stored in the genes table.
Old locus tagHMPREF9498_02589Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454482.1Sequence record reported by the local genomic context database.
Genomic interval17 155-17 883 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 405-17 883 ntGCF_000147925::NZ_GL454482.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147925::NZ_GL454482.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454482.1All displayed genes belong to this local TCS context.
Neighborhood span15 405-17 883 nt2 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 405 nt17 883 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9498_RS16220GCF_000147925#HMPREF9498_RS16220
HKClassic
15 405-17 174 nt · Forward (+)
HMPREF9498_RS16225GCF_000147925#HMPREF9498_RS16225
RRLytTRCurrent focus
17 155-17 883 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147295#HMPREF9497_RS15610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843594
Simplified PFAM architecture for RROC_0843594
PFAM domain coverage: 207 / 242 aa (85.5%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[143-239]
- Domain count: 2
- Matched identifier: RROC_0843594
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 143-239 ; LytTR 143-239
Cluster members and taxonomy
Representative gene: GCF_000147295#HMPREF9497_RS15610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 495 · GCF_000147925
AssemblyASM14792v1 · Scaffoldhaploid
Genome composition3 187 019 bp · 37,0% GCEnterococcus faecalis TX4248
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key