1 Response_reg#1
4-117 aa · 114 aa · 23.1% of protein
Raw token
Response_reg:4:1.38e-24:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9516_RS13130
Response regulator, unclassified
Enterococcus faecalis TX1302 · GCF_000147495
ClassRRTypeunclassifiedLength493 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147495#HMPREF9516_RS13130Stable P2CS identifier used across views.
GenomeGCF_000147495Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length493 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 493 aa (38.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HTH_AraC#2
391-432 aa · 42 aa · 8.5% of protein
Raw token
HTH_AraC:391:0.0000000169:432:42:423 HTH_AraC#3
446-481 aa · 36 aa · 7.3% of protein
Raw token
HTH_AraC:446:0.00000183:481:36:42- Raw architecture: Response_reg:4:1.38e-24:117:114:111#HTH_AraC:391:0.0000000169:432:42:42#HTH_AraC:446:0.00000183:481:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147495::NZ_GL454552.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5964-9187Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9516_02044RefSeq proteinWP_002359882.1
Context group ID
GCF_000147495::NZ_GL454552.1::G00013Context members
HMPREF9516_RS13125HMPREF9516_RS13130
Partner locus tags
HMPREF9516_RS13125HMPREF9516_RS13130
Partner old locus tags
HMPREF9516_02043HMPREF9516_02044
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002359882.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9THF0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9THF0_ENTFLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9516_RS13130Primary locus identifier stored in the genes table.
Old locus tagHMPREF9516_02044Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454552.1Sequence record reported by the local genomic context database.
Genomic interval7 706-9 187 nt1 482 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 964-9 187 ntGCF_000147495::NZ_GL454552.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147495::NZ_GL454552.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454552.1All displayed genes belong to this local TCS context.
Neighborhood span5 964-9 187 nt3 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 964 nt9 187 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9516_RS13125GCF_000147495#HMPREF9516_RS13125
HKClassic
5 964-7 694 nt · Forward (+)
HMPREF9516_RS13130GCF_000147495#HMPREF9516_RS13130
RRunclassifiedCurrent focus
7 706-9 187 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147495#HMPREF9516_RS13130The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0165856
Simplified PFAM architecture for RROC_0165856
PFAM domain coverage: 192 / 493 aa (38.9%)
1 aa493 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[405-483]
- Domain count: 2
- Matched identifier: RROC_0165856
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 405-483 ; HTH_18 405-483
Cluster members and taxonomy
Representative gene: GCF_000147495#HMPREF9516_RS13130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 513 · GCF_000147495
AssemblyASM14749v1 · Scaffoldhaploid
Genome composition2 883 765 bp · 37,5% GCEnterococcus faecalis TX1302
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key