1 Response_reg#1
3-112 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:3:1.1e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9518_RS05460
Response regulator OmpR family
Enterococcus faecalis TX1342 · GCF_000147475
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147475#HMPREF9518_RS05460Stable P2CS identifier used across views.
GenomeGCF_000147475Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 227 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 33.0% of protein
Raw token
Trans_reg_C:149:9.58e-31:223:75:77- Raw architecture: Response_reg:3:1.1e-34:112:111:111#Trans_reg_C:149:9.58e-31:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147475::NZ_GL454565.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42390-44461Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9518_00458RefSeq proteinWP_002363619.1
Context group ID
GCF_000147475::NZ_GL454565.1::G00006Context members
HMPREF9518_RS05455HMPREF9518_RS05460
Partner locus tags
HMPREF9518_RS05455HMPREF9518_RS05460
Partner old locus tags
HMPREF9518_00457HMPREF9518_00458
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002363619.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9518_RS05460Primary locus identifier stored in the genes table.
Old locus tagHMPREF9518_00458Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454565.1Sequence record reported by the local genomic context database.
Genomic interval43 778-44 461 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 390-44 461 ntGCF_000147475::NZ_GL454565.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147475::NZ_GL454565.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454565.1All displayed genes belong to this local TCS context.
Neighborhood span42 390-44 461 nt2 072 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 390 nt44 461 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9518_RS05455GCF_000147475#HMPREF9518_RS05455
HKClassic
42 390-43 781 nt · Reverse (-)
HMPREF9518_RS05460GCF_000147475#HMPREF9518_RS05460
RROmpRCurrent focus
43 778-44 461 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147475#HMPREF9518_RS05460The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354428
Simplified PFAM architecture for RROC_1354428
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1354428
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 149-223 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_000147475#HMPREF9518_RS05460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 515 · GCF_000147475
AssemblyASM14747v1 · Scaffoldhaploid
Genome composition2 836 540 bp · 37,5% GCEnterococcus faecalis TX1342
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key