1 Response_reg#1
3-113 aa · 111 aa · 45.9% of protein
Raw token
Response_reg:3:2.21e-24:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9502_RS12025
Response regulator LytTR family
Enterococcus faecalis TX0031 · GCF_000147275
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147275#HMPREF9502_RS12025Stable P2CS identifier used across views.
GenomeGCF_000147275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 242 aa (86.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-240 aa · 98 aa · 40.5% of protein
Raw token
LytTR:143:1.14e-39:240:98:98- Raw architecture: Response_reg:3:2.21e-24:113:113:111#LytTR:143:1.14e-39:240:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147275::NZ_GL454754.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157994-160472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9502_01830RefSeq proteinWP_002354828.1
Context group ID
GCF_000147275::NZ_GL454754.1::G00014Context members
HMPREF9502_RS12025HMPREF9502_RS12030
Partner locus tags
HMPREF9502_RS12025HMPREF9502_RS12030
Partner old locus tags
HMPREF9502_01830HMPREF9502_01831
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002354828.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TJG2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TJG2_ENTFLDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9502_RS12025Primary locus identifier stored in the genes table.
Old locus tagHMPREF9502_01830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454754.1Sequence record reported by the local genomic context database.
Genomic interval157 994-158 722 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span157 994-160 472 ntGCF_000147275::NZ_GL454754.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147275::NZ_GL454754.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454754.1All displayed genes belong to this local TCS context.
Neighborhood span157 994-160 472 nt2 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 994 nt160 472 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9502_RS12025GCF_000147275#HMPREF9502_RS12025
RRLytTRCurrent focus
157 994-158 722 nt · Reverse (-)
HMPREF9502_RS12030GCF_000147275#HMPREF9502_RS12030
HKClassic
158 703-160 472 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS14825Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843591
Simplified PFAM architecture for RROC_0843591
PFAM domain coverage: 207 / 242 aa (85.5%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[143-239]
- Domain count: 2
- Matched identifier: RROC_0843591
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 143-239 ; LytTR 143-239
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS14825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 499 · GCF_000147275
AssemblyASM14727v1 · Scaffoldhaploid
Genome composition2 820 397 bp · 37,5% GCEnterococcus faecalis TX0031
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key