1 Response_reg#1
4-117 aa · 114 aa · 23.1% of protein
Raw token
Response_reg:4:1.28e-24:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9502_RS03725
Response regulator, unclassified
Enterococcus faecalis TX0031 · GCF_000147275
ClassRRTypeunclassifiedLength493 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147275#HMPREF9502_RS03725Stable P2CS identifier used across views.
GenomeGCF_000147275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length493 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 493 aa (38.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa493 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
391-432 aa · 42 aa · 8.5% of protein
Raw token
HTH_AraC:391:0.0000000173:432:42:423 HTH_AraC#3
446-481 aa · 36 aa · 7.3% of protein
Raw token
HTH_AraC:446:0.00000191:481:36:42- Raw architecture: Response_reg:4:1.28e-24:117:114:111#HTH_AraC:391:0.0000000173:432:42:42#HTH_AraC:446:0.00000191:481:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147275::NZ_GL454731.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41138-44361Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9502_00119RefSeq proteinWP_002356858.1
Context group ID
GCF_000147275::NZ_GL454731.1::G00002Context members
HMPREF9502_RS03725HMPREF9502_RS03730
Partner locus tags
HMPREF9502_RS03725HMPREF9502_RS03730
Partner old locus tags
HMPREF9502_00119HMPREF9502_00120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002356858.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP6V8T6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP6V8T6_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9502_RS03725Primary locus identifier stored in the genes table.
Old locus tagHMPREF9502_00119Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL454731.1Sequence record reported by the local genomic context database.
Genomic interval41 138-42 619 nt1 482 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 138-44 361 ntGCF_000147275::NZ_GL454731.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147275::NZ_GL454731.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL454731.1All displayed genes belong to this local TCS context.
Neighborhood span41 138-44 361 nt3 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 138 nt44 361 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9502_RS03725GCF_000147275#HMPREF9502_RS03725
RRunclassifiedCurrent focus
41 138-42 619 nt · Reverse (-)
HMPREF9502_RS03730GCF_000147275#HMPREF9502_RS03730
HKClassic
42 631-44 361 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS15125Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0165853
Simplified PFAM architecture for RROC_0165853
PFAM domain coverage: 192 / 493 aa (38.9%)
1 aa493 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[405-483]
- Domain count: 2
- Matched identifier: RROC_0165853
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 405-483 ; HTH_18 405-483
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS15125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 499 · GCF_000147275
AssemblyASM14727v1 · Scaffoldhaploid
Genome composition2 820 397 bp · 37,5% GCEnterococcus faecalis TX0031
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key