1 MASE1#1
10-277 aa · 268 aa · 53.6% of protein
Raw token
MASE1:10:1.72e-20:277:300:299P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SSON_RS19985
Histidine kinase, Classic
Shigella sonnei Ss046 · GCF_000092525
ClassHKTypeClassicLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000092525#SSON_RS19985Stable P2CS identifier used across views.
GenomeGCF_000092525Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
MASE1HisKA_3HATPase_c
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage420 / 500 aa (84.0%)Merged over positioned domains only.
Domain description1 MASE1,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
305-370 aa · 66 aa · 13.2% of protein
Raw token
HisKA_3:305:0.0000000000000022:370:67:683 HATPase_c#3
411-496 aa · 86 aa · 17.2% of protein
Raw token
HATPase_c:411:0.00000000000000113:496:104:109- Raw architecture: MASE1:10:1.72e-20:277:300:299#HisKA_3:305:0.0000000000000022:370:67:68#HATPase_c:411:0.00000000000000113:496:104:109
- Domain description: 1 MASE1,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000092525::NC_007384.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3791651-3793743Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSSO_3622%2CSSON_3622RefSeq proteinWP_005151348.1
Context group ID
GCF_000092525::NC_007384.1::G00030Context members
SSON_RS19985SSON_RS19990
Partner locus tags
SSON_RS19985SSON_RS19990
Partner old locus tags
SSO_3622%2CSSON_3622SSO_3623%2CSSON_3623
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005151348.1Primary protein accession used for annex mappings.
UniProt accessionA0A8H8Z9D1Primary UniProt accession resolved in the annex database.
UniProt IDA0A8H8Z9D1_SHIFLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSSON_RS19985Primary locus identifier stored in the genes table.
Old locus tagSSO_3622%2CSSON_3622Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007384.1Sequence record reported by the local genomic context database.
Genomic interval3 791 651-3 793 153 nt1 503 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 791 651-3 793 743 ntGCF_000092525::NC_007384.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000092525::NC_007384.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007384.1All displayed genes belong to this local TCS context.
Neighborhood span3 791 651-3 793 743 nt2 093 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 791 651 nt3 793 743 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SSON_RS19985GCF_000092525#SSON_RS19985
HKClassicCurrent focus
3 791 651-3 793 153 nt · Reverse (-)
SSON_RS19990GCF_000092525#SSON_RS19990
RRunclassified
3 793 153-3 793 743 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092525#SSON_RS19985The current gene is the representative for this cluster.
PFAM architectureMASE1 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1474625
Simplified PFAM architecture for HKOC_1474625
PFAM domain coverage: 418 / 500 aa (83.6%)
1 aa500 aa
MASE1HisKA_3HATPase_c
- Simplified architecture: MASE1 + HisKA_3 + HATPase_c
- Raw architecture: MASE1[12-276] | HisKA_3[305-370] | HATPase_c[411-497]
- Domain count: 3
- Matched identifier: HKOC_1474625
- Positioned domains: MASE1 12-276 ; HisKA_3 305-370 ; HATPase_c 411-497
Cluster members and taxonomy
Representative gene: GCF_000092525#SSON_RS19985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 300 269 · GCF_000092525
AssemblyASM9252v1 · Complete Genomehaploid
Genome composition5 055 316 bp · 51,0% GCShigella sonnei Ss046
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key