1 Response_reg#1
8-114 aa · 107 aa · 47.3% of protein
Raw token
Response_reg:8:8.84e-20:114:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SSON_RS03070
Response regulator, unclassified
Shigella sonnei Ss046 · GCF_000092525
ClassRRTypeunclassifiedLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000092525#SSON_RS03070Stable P2CS identifier used across views.
GenomeGCF_000092525Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_regCitT
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage134 / 226 aa (59.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 CitTSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 CitT#2
134-160 aa · 27 aa · 11.9% of protein
Raw token
CitT:134:0.0000000166:160:28:30- Raw architecture: Response_reg:8:8.84e-20:114:107:111#CitT:134:0.0000000166:160:28:30
- Domain description: 1 Response_reg,1 CitT
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000092525::NC_007384.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span613642-614322Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSSO_0573%2CSSON_0573RefSeq proteinWP_000126495.1
Context group ID
GCF_000092525::NC_007384.1::G00003Context members
SSON_RS03070
Partner locus tags
SSON_RS03070
Partner old locus tags
SSO_0573%2CSSON_0573
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000126495.1Primary protein accession used for annex mappings.
UniProt accessionQ3Z4H3Primary UniProt accession resolved in the annex database.
UniProt IDQ3Z4H3_SHISSDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSSON_RS03070Primary locus identifier stored in the genes table.
Old locus tagSSO_0573%2CSSON_0573Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007384.1Sequence record reported by the local genomic context database.
Genomic interval613 642-614 322 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span613 642-614 322 ntGCF_000092525::NC_007384.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000092525::NC_007384.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007384.1All displayed genes belong to this local TCS context.
Neighborhood span613 642-614 322 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
613 642 nt614 322 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SSON_RS03070GCF_000092525#SSON_RS03070
RRunclassifiedCurrent focus
613 642-614 322 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092525#SSON_RS03070The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408391
Simplified PFAM architecture for RROC_1408391
PFAM domain coverage: 175 / 226 aa (77.4%)
1 aa226 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[8-117] | HTH_64[162-226]
- Domain count: 2
- Matched identifier: RROC_1408391
- Positioned domains: Response_reg 8-117 ; Response_reg 8-117 ; HTH_64 162-226 ; HTH_64 162-226
Cluster members and taxonomy
Representative gene: GCF_000092525#SSON_RS03070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 300 269 · GCF_000092525
AssemblyASM9252v1 · Complete Genomehaploid
Genome composition5 055 316 bp · 51,0% GCShigella sonnei Ss046
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key