1 HAMP#1
164-232 aa · 69 aa · 15.4% of protein
Raw token
HAMP:164:0.00000141:232:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SSON_RS17490
Histidine kinase, Classic
Shigella sonnei Ss046 · GCF_000092525
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000092525#SSON_RS17490Stable P2CS identifier used across views.
GenomeGCF_000092525Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 449 aa (50.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-301 aa · 64 aa · 14.3% of protein
Raw token
HisKA:238:0.00000000000481:301:64:643 HATPase_c#3
348-442 aa · 95 aa · 21.2% of protein
Raw token
HATPase_c:348:1.04e-25:442:99:109- Raw architecture: HAMP:164:0.00000141:232:70:69#HisKA:238:0.00000000000481:301:64:64#HATPase_c:348:1.04e-25:442:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000092525::NC_007384.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3323924-3325929Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSSO_3165%2CSSON_3165RefSeq proteinWP_000673376.1
Context group ID
GCF_000092525::NC_007384.1::G00027Context members
SSON_RS17485SSON_RS17490
Partner locus tags
SSON_RS17485SSON_RS17490
Partner old locus tags
SSO_3164%2CSSON_3164SSO_3165%2CSSON_3165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000673376.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0KVG9Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0KVG9_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSSON_RS17490Primary locus identifier stored in the genes table.
Old locus tagSSO_3165%2CSSON_3165Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007384.1Sequence record reported by the local genomic context database.
Genomic interval3 324 580-3 325 929 nt1 350 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 323 924-3 325 929 ntGCF_000092525::NC_007384.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000092525::NC_007384.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007384.1All displayed genes belong to this local TCS context.
Neighborhood span3 323 924-3 325 929 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 323 924 nt3 325 929 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SSON_RS17485GCF_000092525#SSON_RS17485
RROmpR
3 323 924-3 324 583 nt · Forward (+)
SSON_RS17490GCF_000092525#SSON_RS17490
HKClassicCurrent focus
3 324 580-3 325 929 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092525#SSON_RS17490The current gene is the representative for this cluster.
PFAM architecture2CSK_N + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1973265
Simplified PFAM architecture for HKOC_1973265
PFAM domain coverage: 297 / 449 aa (66.1%)
1 aa449 aa
2CSK_NHisKAHATPase_c
- Simplified architecture: 2CSK_N + HisKA + HATPase_c
- Raw architecture: 2CSK_N[23-157] | HisKA[237-301] | HATPase_c[349-445]
- Domain count: 3
- Matched identifier: HKOC_1973265
- Positioned domains: 2CSK_N 23-157 ; HisKA 237-301 ; HATPase_c 349-445
Cluster members and taxonomy
Representative gene: GCF_000092525#SSON_RS17490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 300 269 · GCF_000092525
AssemblyASM9252v1 · Complete Genomehaploid
Genome composition5 055 316 bp · 51,0% GCShigella sonnei Ss046
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key